|Probabilistic Boolean networks: a rule-based uncertainty model for gene regulatory networks|
I Shmulevich, ER Dougherty, S Kim, W Zhang
Bioinformatics 18 (2), 261-274, 2002
|Identification of distinct basal and luminal subtypes of muscle-invasive bladder cancer with different sensitivities to frontline chemotherapy|
W Choi, S Porten, S Kim, D Willis, ER Plimack, J Hoffman-Censits, B Roth, ...
Cancer cell 25 (2), 152-165, 2014
|Comprehensive pan-genomic characterization of adrenocortical carcinoma|
S Zheng, AD Cherniack, N Dewal, RA Moffitt, L Danilova, BA Murray, ...
Cancer cell 29 (5), 723-736, 2016
|Molecular dissection of hyperdiploid multiple myeloma by gene expression profiling|
WJ Chng, S Kumar, S VanWier, G Ahmann, T Price-Troska, K Henderson, ...
Cancer research 67 (7), 2982-2989, 2007
|Coefficient of determination in nonlinear signal processing|
ER Dougherty, S Kim, Y Chen
Signal Processing 80 (10), 2219-2235, 2000
|Gene expression profile in multiple sclerosis patients and healthy controls: identifying pathways relevant to disease|
R Bomprezzi, M Ringner, S Kim, ML Bittner, J Khan, Y Chen, A Elkahloun, ...
Human molecular genetics 12 (17), 2191-2199, 2003
|Inference from clustering with application to gene-expression microarrays|
ER Dougherty, J Barrera, M Brun, S Kim, RM Cesar, Y Chen, M Bittner, ...
Journal of Computational Biology 9 (1), 105-126, 2002
|Can Markov chain models mimic biological regulation?|
S Kim, H Li, ER Dougherty, N Cao, Y Chen, M Bittner, EB Suh
Journal of Biological Systems 10 (04), 337-357, 2002
|Identification of extracellular miRNA in human cerebrospinal fluid by next-generation sequencing|
KL Burgos, A Javaherian, R Bomprezzi, L Ghaffari, S Rhodes, ...
Rna 19 (5), 712-722, 2013
|Multivariate measurement of gene expression relationships|
S Kim, ER Dougherty, Y Chen, K Sivakumar, P Meltzer, JM Trent, ...
Genomics 67 (2), 201-209, 2000
|Identification of Combination Gene Sets for Glioma Classification 1 Supported in part by the Tobacco Settlement Funds as appropriated by the Texas State Legislature, by a …|
S Kim, ER Dougherty, I Shmulevich, KR Hess, SR Hamilton, JM Trent, ...
Molecular Cancer Therapeutics 1 (13), 1229-1236, 2002
|MicroRNA‐328 is associated with (non‐small) cell lung cancer (NSCLC) brain metastasis and mediates NSCLC migration|
S Arora, AR Ranade, NL Tran, S Nasser, S Sridhar, RL Korn, JTD Ross, ...
International journal of cancer 129 (11), 2621-2631, 2011
|General nonlinear framework for the analysis of gene interaction via multivariate expression arrays|
S Kim, ER Dougherty, ML Bittner, Y Chen, K Sivakumar, PS Meltzer, ...
Journal of biomedical optics 5 (4), 411-425, 2000
|Growing genetic regulatory networks from seed genes|
RF Hashimoto, S Kim, I Shmulevich, W Zhang, ML Bittner, ER Dougherty
Bioinformatics 20 (8), 1241-1247, 2004
|Fuzzy c-means clustering with prior biological knowledge|
L Tari, C Baral, S Kim
Journal of Biomedical Informatics 42 (1), 74-81, 2009
|Strong feature sets from small samples|
S Kim, ER Dougherty, J Barrera, Y Chen, ML Bittner, JM Trent
Journal of Computational biology 9 (1), 127-146, 2002
|Total extracellular small RNA profiles from plasma, saliva, and urine of healthy subjects|
A Yeri, A Courtright, R Reiman, E Carlson, T Beecroft, A Janss, A Siniard, ...
Scientific reports 7, 44061, 2017
|Genomic signal processing and statistics|
Hindawi Publishing Corporation, 2005
|Adrenocortical carcinoma survival rates correlated to genomic copy number variants|
EA Stephan, TH Chung, CS Grant, S Kim, DD Von Hoff, JM Trent, ...
Molecular cancer therapeutics 7 (2), 425-431, 2008
|Microarray reveals differences in both tumors and vascular specific gene expression in de novo CD5+ and CD5− diffuse large B-cell lymphomas|
T Kobayashi, M Yamaguchi, S Kim, J Morikawa, S Ogawa, S Ueno, E Suh, ...
Cancer research 63 (1), 60-66, 2003