| Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ... Gigascience 2 (1), 2047-217X-2-10, 2013 | 811 | 2013 |
| Time-optimal paths for a Dubins airplane H Chitsaz, SM LaValle 2007 46th IEEE conference on decision and control, 2379-2384, 2007 | 348 | 2007 |
| Efficient de novo assembly of single-cell bacterial genomes from short-read data sets H Chitsaz, JL Yee-Greenbaum, G Tesler, MJ Lombardo, CL Dupont, ... Nature biotechnology 29 (10), 915-921, 2011 | 255 | 2011 |
| Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum JS McLean, MJ Lombardo, JH Badger, A Edlund, M Novotny, ... Proceedings of the National Academy of Sciences 110 (26), E2390-E2399, 2013 | 194 | 2013 |
| Minimum Wheel-Rotation Paths for Differential-Drive Mobile Robots Among Piecewise Smooth Obstacles H Chitsaz, SM LaValle IEEE Conference on Robotics and Automation (ICRA), 2718 - 2723, 2007 | 151* | 2007 |
| Minimum wheel-rotation paths for differential-drive mobile robots H Chitsaz, SM LaValle, DJ Balkcom, MT Mason Robotics and Automation, 2006. ICRA 2006. Proceedings 2006 IEEE …, 2006 | 144 | 2006 |
| DNA methylation regulates discrimination of enhancers from promoters through a H3K4me1-H3K4me3 seesaw mechanism A Sharifi-Zarchi, D Gerovska, K Adachi, M Totonchi, H Pezeshk, RJ Taft, ... BMC genomics 18, 1-21, 2017 | 137 | 2017 |
| Single-cell genome and metatranscriptome sequencing reveal metabolic interactions of an alkane-degrading methanogenic community M Embree, H Nagarajan, N Movahedi, H Chitsaz, K Zengler The ISME journal 8 (4), 757-767, 2014 | 131 | 2014 |
| A partition function algorithm for interacting nucleic acid strands H Chitsaz, R Salari, SC Sahinalp, R Backofen Bioinformatics 25 (12), i365-i373, 2009 | 131 | 2009 |
| SEQuel: improving the accuracy of genome assemblies R Ronen, C Boucher, H Chitsaz, P Pevzner Bioinformatics 28 (12), i188-i196, 2012 | 82 | 2012 |
| A fast vision system for middle size robots in robocup M Jamzad, BS Sadjad, VS Mirrokni, M Kazemi, H Chitsaz, A Heydarnoori, ... RoboCup 2001: Robot Soccer World Cup V 5, 71-80, 2002 | 69 | 2002 |
| Machine learning and network analysis of molecular dynamics trajectories reveal two chains of red/ox-specific residue interactions in human protein disulfide isomerase R Karamzadeh, MH Karimi-Jafari, A Sharifi-Zarchi, H Chitsaz, ... Scientific reports 7 (1), 3666, 2017 | 45 | 2017 |
| De novo co-assembly of bacterial genomes from multiple single cells NS Movahedi, E Forouzmand, H Chitsaz 2012 IEEE International Conference on Bioinformatics and Biomedicine, 1-5, 2012 | 41 | 2012 |
| biRNA: Fast RNA-RNA binding sites prediction H Chitsaz, R Backofen, SC Sahinalp Algorithms in Bioinformatics: 9th International Workshop, WABI 2009 …, 2009 | 40 | 2009 |
| DeePathology: deep multi-task learning for inferring molecular pathology from cancer transcriptome B Azarkhalili, A Saberi, H Chitsaz, A Sharifi-Zarchi Scientific reports 9 (1), 16526, 2019 | 37 | 2019 |
| Draft genome of Dugesia japonica provides insights into conserved regulatory elements of the brain restriction gene nou-darake in planarians Y An, A Kawaguchi, C Zhao, A Toyoda, A Sharifi-Zarchi, SA Mousavi, ... Zoological letters 4, 1-12, 2018 | 36 | 2018 |
| SNPPhenA: a corpus for extracting ranked associations of single-nucleotide polymorphisms and phenotypes from literature B Bokharaeian, A Diaz, N Taghizadeh, H Chitsaz, R Chavoshinejad Journal of biomedical semantics 8, 1-13, 2017 | 29 | 2017 |
| Exact Pareto-Optimal Coordination of Two Translating Polygonal Robots on a Cyclic Roadmap H Chitsaz, SM LaValle, JM O'Kane 20th Canadian Conference on Computational Geometry (CCCG), 2008 | 27* | 2008 |
| Cell identity codes: understanding cell identity from gene expression profiles using deep neural networks F Abdolhosseini, B Azarkhalili, A Maazallahi, A Kamal, SA Motahari, ... Scientific reports 9 (1), 2342, 2019 | 20 | 2019 |
| Generalizing the Dubins and Reeds-Shepp cars: fastest paths for bounded-velocity mobile robots AA Furtuna, DJ Balkcom, H Chitsaz, P Kavathekar 2008 IEEE international conference on robotics and automation, 2533-2539, 2008 | 20 | 2008 |
Ali Sharifi-ZarchiAssistant Prof. of Bioinformatics and Artificial Intelligence, Sharif University of TechnologyVerified email at sharif.ir
