| The complete sequence of a human genome S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ... Science 376 (6588), 44-53, 2022 | 1769 | 2022 |
| Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes K Shafin, T Pesout, R Lorig-Roach, M Haukness, HE Olsen, C Bosworth, ... Nature biotechnology 38 (9), 1044-1053, 2020 | 423* | 2020 |
| A draft human pangenome reference WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ... Nature 617 (7960), 312-324, 2023 | 305 | 2023 |
| Complete genomic and epigenetic maps of human centromeres N Altemose, GA Logsdon, AV Bzikadze, P Sidhwani, SA Langley, ... Science 376 (6588), eabl4178, 2022 | 250 | 2022 |
| A complete reference genome improves analysis of human genetic variation S Aganezov, SM Yan, DC Soto, M Kirsche, S Zarate, P Avdeyev, ... Science 376 (6588), eabl3533, 2022 | 202 | 2022 |
| Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads K Shafin, T Pesout, PC Chang, M Nattestad, A Kolesnikov, S Goel, G Baid, ... Nature methods 18 (11), 1322-1332, 2021 | 177* | 2021 |
| Ultrarapid nanopore genome sequencing in a critical care setting JE Gorzynski, SD Goenka, K Shafin, TD Jensen, DG Fisk, ME Grove, ... New England Journal of Medicine 386 (7), 700-702, 2022 | 146 | 2022 |
| PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions ND Olson, J Wagner, J McDaniel, SH Stephens, ST Westreich, ... Cell genomics 2 (5), 2022 | 115 | 2022 |
| Benchmarking challenging small variants with linked and long reads J Wagner, ND Olson, L Harris, Z Khan, J Farek, M Mahmoud, A Stankovic, ... Cell Genomics 2 (5), 2022 | 114 | 2022 |
| The complete sequence of a human Y chromosome A Rhie, S Nurk, M Cechova, SJ Hoyt, DJ Taylor, N Altemose, PW Hook, ... Nature 621 (7978), 344-354, 2023 | 111 | 2023 |
| Semi-automated assembly of high-quality diploid human reference genomes ED Jarvis, G Formenti, A Rhie, A Guarracino, C Yang, J Wood, A Tracey, ... Nature 611 (7936), 519-531, 2022 | 104 | 2022 |
| DeepConsensus improves the accuracy of sequences with a gap-aware sequence transformer G Baid, DE Cook, K Shafin, T Yun, F Llinares-López, Q Berthet, ... Nature Biotechnology 41 (2), 232-238, 2023 | 71* | 2023 |
| Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies AM Mc Cartney, K Shafin, M Alonge, AV Bzikadze, G Formenti, ... Nature methods 19 (6), 687-695, 2022 | 62 | 2022 |
| Accelerated identification of disease-causing variants with ultra-rapid nanopore genome sequencing SD Goenka, JE Gorzynski, K Shafin, DG Fisk, T Pesout, TD Jensen, ... Nature Biotechnology 40 (7), 1035-1041, 2022 | 48 | 2022 |
| Merfin: improved variant filtering, assembly evaluation and polishing via k-mer validation G Formenti, A Rhie, BP Walenz, F Thibaud-Nissen, K Shafin, S Koren, ... Nature methods 19 (6), 696-704, 2022 | 34* | 2022 |
| Scalable Nanopore sequencing of human genomes provides a comprehensive view of haplotype-resolved variation and methylation M Kolmogorov, KJ Billingsley, M Mastoras, M Meredith, J Monlong, ... Nature Methods 20 (10), 1483-1492, 2023 | 31 | 2023 |
| Development of an RFID based access control system in the context of Bangladesh MK Shafin, KL Kabir, N Hasan, IJ Mouri, ST Islam, L Ansari, MM Karim, ... 2015 International Conference on Innovations in Information, Embedded and …, 2015 | 29 | 2015 |
| Gaps and complex structurally variant loci in phased genome assemblies D Porubsky, MR Vollger, WT Harvey, AN Rozanski, P Ebert, G Hickey, ... Genome research 33 (4), 496-510, 2023 | 17 | 2023 |
| Mongol Barota: A next generation rover MK Shafin, KL Kabir, I Ridwan, TA Fuad, S Bardhan, MIH Raju, A Tahira, ... The 8th International Conference on Software, Knowledge, Information …, 2014 | 11 | 2014 |
| The complete sequence and comparative analysis of ape sex chromosomes KD Makova, BD Pickett, RS Harris, GA Hartley, M Cechova, K Pal, S Nurk, ... bioRxiv, 2023.11. 30.569198, 2023 | 7 | 2023 |
Pi-Chuan ChangGoogleVerified email at google.com
