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Daniel C. Jones
Daniel C. Jones
Graduate Student, Computer Science and Engineering, University of Washington
Verified email at cs.washington.edu
Title
Cited by
Cited by
Year
Let-7 family of microRNA is required for maturation and adult-like metabolism in stem cell-derived cardiomyocytes
KT Kuppusamy, DC Jones, H Sperber, A Madan, KA Fischer, ...
Proceedings of the National Academy of Sciences 112 (21), E2785-E2794, 2015
2792015
Compression of next-generation sequencing reads aided by highly efficient de novo assembly
DC Jones, WL Ruzzo, X Peng, MG Katze
Nucleic acids research 40 (22), e171-e171, 2012
2292012
Metabolic control over mTOR-dependent diapause-like state
AM Hussein, Y Wang, J Mathieu, L Margaretha, C Song, DC Jones, ...
Developmental cell 52 (2), 236-250. e7, 2020
912020
Inhibition of β-catenin signaling respecifies anterior-like endothelium into beating human cardiomyocytes
NJ Palpant, L Pabon, M Roberts, B Hadland, D Jones, C Jones, RT Moon, ...
Development 142 (18), 3198-3209, 2015
782015
A new approach to bias correction in RNA-Seq
DC Jones, WL Ruzzo, X Peng, MG Katze
Bioinformatics 28 (7), 921-928, 2012
462012
Chromatin and transcriptional analysis of mesoderm progenitor cells identifies HOPX as a regulator of primitive hematopoiesis
NJ Palpant, Y Wang, B Hadland, RJ Zaunbrecher, M Redd, D Jones, ...
Cell reports 20 (7), 1597-1608, 2017
392017
Isolator: accurate and stable analysis of isoform-level expression in RNA-Seq experiments
DC Jones, KT Kuppusamy, NJ Palpant, X Peng, CE Murry, ...
BioRxiv, 088765, 2016
72016
Assessment and improvement of Indian‐origin rhesus macaque and M auritian‐origin cynomolgus macaque genome annotations using deep transcriptome sequencing data
X Peng, L Pipes, H Xiong, RR Green, DC Jones, WL Ruzzo, GP Schroth, ...
Journal of medical primatology 43 (5), 317-328, 2014
52014
Characterization of immunosuppressive myeloid cells in Merkel cell carcinoma: correlation with resistance to PD-1 pathway blockade
S Tabachnick-Cherny, T Pulliam, HJ Rodriguez, X Fan, DS Hippe, ...
Clinical Cancer Research 30 (6), 1189-1199, 2024
12024
An information theoretic approach to detecting spatially varying genes
DC Jones, P Danaher, Y Kim, JM Beechem, R Gottardo, EW Newell
Cell Reports Methods 3 (6), 2023
12023
Polee: RNA-Seq analysis using approximate likelihood
DC Jones, WL Ruzzo
NAR Genomics and Bioinformatics 3 (2), lqab046, 2021
12021
Spatial-resolved single-cell analysis of the tumor microenvironment in Alaska Native colorectal cancer patients
H Yin, D Redwood, K Smythe, D Jones, MG Houghton, KC Barry, ...
Cancer Research 84 (6_Supplement), 3423-3423, 2024
2024
173 Deciphering the tumor microenvironment of renal cell carcinoma: integrating single-cell sequencing and In Situ spatial transcriptomics for comprehensive characterization of …
H Ryu, D Glass, A Hadadianpour, DC Jones, LT Nguyen, E Moelhman, ...
Journal for ImmunoTherapy of Cancer 11 (Suppl 1), 2023
2023
567 Merkel cell carcinomas are infiltrated by tumor-associated macrophages that counteract intratumoral CD8 T-cell benefit and correlate with resistence to PD-1 pathway blockade
S Tabachnick-Cherny, T Pulliam, HR Chevez, X Fan, DS Hippe, ...
Journal for ImmunoTherapy of Cancer 11 (Suppl 1), 2023
2023
Assessing and Adjusting for Technical Bias in High Throughput Sequencing Data
D Jones
2022
The analysis of RNA-Seq experiments using approximate likelihood
DC Jones
University of Washington, 2020
2020
Utilising The E-Handover System As Part Of The Junior Internship Programme And Incorporating It Into The General Surgery Module For Final Year Medical Students
D Jones, N Donlon, K Barry
IRISH JOURNAL OF MEDICAL SCIENCE 187, S68-S68, 2018
2018
Analyzing the Morphology of 3T3 Fibroblasts in Microenvironment
K Lin, W Hong, W Lin, D Camarillo, D Jones
Biophysical Journal 100 (3), 624a, 2011
2011
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Articles 1–18