|Decoding the regulatory network of early blood development from single-cell gene expression measurements|
V Moignard, S Woodhouse, L Haghverdi, AJ Lilly, Y Tanaka, ...
Nature biotechnology 33 (3), 269, 2015
|Single-cell analysis of CD4+ T-cell differentiation reveals three major cell states and progressive acceleration of proliferation|
V Proserpio, A Piccolo, L Haim-Vilmovsky, G Kar, T Lönnberg, ...
Genome biology 17 (1), 103, 2016
|BTR: training asynchronous Boolean models using single-cell expression data|
CY Lim, H Wang, S Woodhouse, N Piterman, L Wernisch, J Fisher, ...
BMC bioinformatics 17 (1), 355, 2016
|Single-cell analyses of regulatory network perturbations using enhancer-targeting TALEs suggest novel roles for PU. 1 during haematopoietic specification|
AC Wilkinson, VKS Kawata, J Schütte, X Gao, S Antoniou, C Baumann, ...
Development 141 (20), 4018-4030, 2014
|Transcriptional hierarchies regulating early blood cell development|
V Moignard, S Woodhouse, J Fisher, B Göttgens
Blood Cells, Molecules, and Diseases 51 (4), 239-247, 2013
|Synthesising executable gene regulatory networks from single-cell gene expression data|
J Fisher, AS Köksal, N Piterman, S Woodhouse
International Conference on Computer Aided Verification, 544-560, 2015
|Processing, visualising and reconstructing network models from single‐cell data|
S Woodhouse, V Moignard, B Göttgens, J Fisher
Immunology and cell biology 94 (3), 256-265, 2016
|Building an ENCODE-style data compendium on a shoestring|
D Ruau, FSL Ng, NK Wilson, R Hannah, E Diamanti, P Lombard, ...
Nature methods 10 (10), 926, 2013
|SCNS: a graphical tool for reconstructing executable regulatory networks from single-cell genomic data|
S Woodhouse, N Piterman, CM Wintersteiger, B Göttgens, J Fisher
BMC systems biology 12 (1), 59, 2018
|Program synthesis meets deep learning for decoding regulatory networks|
J Fisher, S Woodhouse
Current Opinion in Systems Biology 4, 64-70, 2017
|Erratum to: Single cell analysis of CD4+ T cell differentiation reveals three major cell states and progressive acceleration of proliferation|
V Proserpio, A Piccolo, L Haim-Vilmovsky, G Kar, T Lonnberg, ...
Genome biology 17 (1), 2016
|Single-Cell Transcriptomic Analysis of mIHC Images via Antigen Mapping|
PGC KW Govek, EC Troisi, S Woodhouse
bioRxiv, 672501, 2019
|Using state space exploration to determine how gene regulatory networks constrain mutation order in cancer evolution|
MA Clarke, S Woodhouse, N Piterman, BA Hall, J Fisher
Automated reasoning for systems biology and medicine, 133-153, 2019
|Synthesising executable gene regulatory networks in haematopoiesis from single-cell gene expression data|
University of Cambridge, 2017
|Rora regulates activated T helper cells during inflammation|
L Haim-Vilmovsky, JA Walker, J Henriksson, Z Miao, E Natan, G Kar, ...
BioRxiv, 709998, 2019