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Givanna Putri
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Analysing high-throughput sequencing data in Python with HTSeq 2.0
GH Putri, S Anders, PT Pyl, JE Pimanda, F Zanini
Bioinformatics 38 (10), 2943-2945, 2022
4412022
Integrated immune dynamics define correlates of COVID-19 severity and antibody responses
M Koutsakos, LC Rowntree, L Hensen, BY Chua, CE Van De Sandt, ...
Cell Reports Medicine 2 (3), 2021
1402021
Integration, exploration, and analysis of high‐dimensional single‐cell cytometry data using Spectre
TM Ashhurst, F Marsh‐Wakefield, GH Putri, AG Spiteri, D Shinko, ...
Cytometry Part A 101 (3), 237-253, 2022
962022
ChronoClust: Density-based clustering and cluster tracking in high-dimensional time-series data
GH Putri, MN Read, I Koprinska, D Singh, U Röhm, TM Ashhurst, ...
Knowledge-Based Systems 174, 9-26, 2019
222019
Peripheral B‐cell dysregulation is associated with relapse after long‐term quiescence in patients with multiple sclerosis
F Marsh‐Wakefield, P Juillard, TM Ashhurst, A Juillard, D Shinko, GH Putri, ...
Immunology and cell biology 100 (6), 453-467, 2022
142022
Library size confounds biology in spatial transcriptomics data
DD Bhuva, CW Tan, A Salim, C Marceaux, MA Pickering, J Chen, ...
Genome Biology 25 (1), 99, 2024
62024
Profiling apache HIVE query from run time logs
GP Haryono, Y Zhou
2016 International Conference on Big Data and Smart Computing (BigComp), 61-68, 2016
62016
Dimensionality reduction for clustering and cluster tracking of cytometry data
GH Putri, MN Read, I Koprinska, TM Ashhurst, NJC King
Artificial Neural Networks and Machine Learning–ICANN 2019: Text and Time …, 2019
32019
SuperCellCyto: enabling efficient analysis of large scale cytometry datasets
GH Putri, G Howitt, F Marsh-Wakefield, TM Ashhurst, B Phipson
Genome Biology 25 (1), 89, 2024
22024
Using single-cell cytometry to illustrate integrated multi-perspective evaluation of clustering algorithms using Pareto fronts
GH Putri, I Koprinska, TM Ashhurst, NJC King, MN Read
Bioinformatics 37 (14), 1972-1981, 2021
22021
Extraction and quantification of lineage-tracing barcodes with NextClone and CloneDetective
GH Putri, N Pires, NM Davidson, C Blyth, A AlKhafaji, S Goel, B Phipson
bioRxiv, 2023.11. 19.567755, 2023
12023
Spatial mapping of the hepatocellular carcinoma landscape identifies unique intratumoural perivascular-immune neighbourhoods
F Marsh-Wakefield, C Santhakumar, AL Ferguson, TM Ashhurst, JS Shin, ...
medRxiv, 2024
2024
TrackSOM: Mapping immune response dynamics through clustering of time‐course cytometry data
GH Putri, J Chung, DN Edwards, F Marsh‐Wakefield, I Koprinska, ...
Cytometry Part A 103 (1), 54-70, 2023
2023
Revealing the Development of Immune Response through Temporal Dynamic Clustering
GH Putri
2021
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Articles 1–14