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Talima Pearson
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QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints, 2018
15276*2018
Staphylococcus aureus CC398: host adaptation and emergence of methicillin resistance in livestock
LB Price, M Stegger, H Hasman, M Aziz, J Larsen, PS Andersen, ...
MBio 3 (1), 10.1128/mbio. 00305-11, 2012
8512012
Yersinia pestis and the Plague of Justinian 541–543 AD: a genomic analysis
DM Wagner, J Klunk, M Harbeck, A Devault, N Waglechner, JW Sahl, ...
The Lancet infectious diseases 14 (4), 319-326, 2014
5712014
Global genetic population structure of Bacillus anthracis
MN Van Ert, WR Easterday, LY Huynh, RT Okinaka, ME Hugh-Jones, ...
PloS one 2 (5), e461, 2007
4812007
The Epidemic of Extended-Spectrum-β-Lactamase-Producing Escherichia coli ST131 Is Driven by a Single Highly Pathogenic Subclone, H30-Rx
LB Price, JR Johnson, M Aziz, C Clabots, B Johnston, V Tchesnokova, ...
MBio 4 (6), 10.1128/mbio. 00377-13, 2013
4682013
Anthrax molecular epidemiology and forensics: using the appropriate marker for different evolutionary scales
P Keim, MN Van Ert, T Pearson, AJ Vogler, LY Huynh, DM Wagner
Infection, Genetics and Evolution 4 (3), 205-213, 2004
3902004
Population genetics of Vibrio cholerae from Nepal in 2010: evidence on the origin of the Haitian outbreak
RS Hendriksen, LB Price, JM Schupp, JD Gillece, RS Kaas, ...
MBio 2 (4), 10.1128/mbio. 00157-11, 2011
3472011
Phylogenetic discovery bias in Bacillus anthracis using single-nucleotide polymorphisms from whole-genome sequencing
T Pearson, JD Busch, J Ravel, TD Read, SD Rhoton, JM U'ren, ...
Proceedings of the National Academy of Sciences 101 (37), 13536-13541, 2004
3262004
Whole-Genome-Based Phylogeny and Divergence of the Genus Brucella
JT Foster, SM Beckstrom-Sternberg, T Pearson, JS Beckstrom-Sternberg, ...
Journal of bacteriology 191 (8), 2864-2870, 2009
2122009
Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer
T Pearson, P Giffard, S Beckstrom-Sternberg, R Auerbach, H Hornstra, ...
BMC biology 7, 1-14, 2009
2092009
Phylogeography of Francisella tularensis: Global Expansion of a Highly Fit Clone
AJ Vogler, D Birdsell, LB Price, JR Bowers, SM Beckstrom-Sternberg, ...
Journal of bacteriology 191 (8), 2474-2484, 2009
2082009
A Genomic Survey of Positive Selection in Burkholderia pseudomallei Provides Insights into the Evolution of Accidental Virulence
T Nandi, C Ong, AP Singh, J Boddey, T Atkins, M Sarkar-Tyson, ...
PLoS pathogens 6 (4), e1000845, 2010
1552010
Strain-Specific Single-Nucleotide Polymorphism Assays for the Bacillus anthracis Ames Strain
MN Van Ert, WR Easterday, TS Simonson, JM U'Ren, T Pearson, ...
Journal of clinical microbiology 45 (1), 47-53, 2007
1512007
In Vitro Selection and Characterization of Bacillus anthracis Mutants with High-Level Resistance to Ciprofloxacin
LB Price, A Vogler, T Pearson, JD Busch, JM Schupp, P Keim
Antimicrobial agents and chemotherapy 47 (7), 2362-2365, 2003
1502003
Phylogenetic understanding of clonal populations in an era of whole genome sequencing
T Pearson, RT Okinaka, JT Foster, P Keim
Infection, Genetics and Evolution 9 (5), 1010-1019, 2009
1412009
Comparative phylogenomics and evolution of the Brucellae reveal a path to virulence
AR Wattam, JT Foster, SP Mane, SM Beckstrom-Sternberg, ...
Journal of bacteriology 196 (5), 920-930, 2014
1352014
Continuing Evolution of Burkholderia mallei Through Genome Reduction and Large-Scale Rearrangements
L Losada, CM Ronning, D DeShazer, D Woods, N Fedorova, ...
Genome biology and evolution 2, 102-116, 2010
1322010
Within-host evolution of Burkholderia pseudomallei over a twelve-year chronic carriage infection
EP Price, DS Sarovich, M Mayo, A Tuanyok, KP Drees, M Kaestli, ...
MBio 4 (4), 10.1128/mbio. 00388-13, 2013
1182013
A Horizontal Gene Transfer Event Defines Two Distinct Groups within Burkholderia pseudomallei That Have Dissimilar Geographic Distributions
A Tuanyok, RK Auerbach, TS Brettin, DC Bruce, AC Munk, JC Detter, ...
Journal of bacteriology 189 (24), 9044-9049, 2007
1172007
Molecular epidemiologic investigation of an anthrax outbreak among heroin users, Europe
EP Price, ML Seymour, DS Sarovich, J Latham, SR Wolken, J Mason, ...
Emerging infectious diseases 18 (8), 1307, 2012
1162012
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