Genis Parra
Genis Parra
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Initial sequencing and comparative analysis of the mouse genome
RH Waterston, L Pachter
Nature 420 (6915), 520-562, 2002
Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype
O Jaillon, JM Aury, F Brunet, JL Petit, N Stange-Thomann, E Mauceli, ...
Nature 431 (7011), 946-957, 2004
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes
G Parra, K Bradnam, I Korf
Bioinformatics 23 (9), 1061-1067, 2007
MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes
BL Cantarel, I Korf, SMC Robb, G Parra, E Ross, B Moore, C Holt, ...
Genome research 18 (1), 188-196, 2008
Assessing the gene space in draft genomes
G Parra, K Bradnam, Z Ning, T Keane, I Korf
Nucleic acids research 37 (1), 289-297, 2009
Are splicing mutations the most frequent cause of hereditary disease?
N López-Bigas, B Audit, C Ouzounis, G Parra, R Guigó
FEBS letters 579 (9), 1900-1903, 2005
Geneid in drosophila
G Parra, E Blanco, R Guigó
Genome research 10 (4), 511-515, 2000
Comparative gene prediction in human and mouse
G Parra, P Agarwal, JF Abril, T Wiehe, JW Fickett, R Guigó
Genome research 13 (1), 108-117, 2003
Using geneid to identify genes
E Blanco, G Parra, R Guigó
Current protocols in bioinformatics 18 (1), 4.3. 1-4.3. 28, 2007
Tandem chimerism as a means to increase protein complexity in the human genome
G Parra, A Reymond, N Dabbouseh, ET Dermitzakis, R Castelo, ...
Genome research 16 (1), 37-44, 2006
Patterns of coding variation in the complete exomes of three Neandertals
S Castellano, G Parra, FA Sánchez-Quinto, F Racimo, M Kuhlwilm, ...
Proceedings of the National Academy of Sciences 111 (18), 6666-6671, 2014
Sequence and analysis of chromosome 2 of Dictyostelium discoideum
G Glöckner, L Eichinger, K Szafranski, JA Pachebat, AT Bankier, PH Dear, ...
Nature 418 (6893), 79-85, 2002
Promoter-proximal introns in Arabidopsis thaliana are enriched in dispersed signals that elevate gene expression
AB Rose, T Elfersi, G Parra, I Korf
The Plant Cell 20 (3), 543-551, 2008
Comparison of mouse and human genomes followed by experimental verification yields an estimated 1,019 additional genes
R Guigo, ET Dermitzakis, P Agarwal, CP Ponting, G Parra, A Reymond, ...
Proceedings of the National Academy of Sciences 100 (3), 1140-1145, 2003
The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences
A Kovach, JL Wegrzyn, G Parra, C Holt, GE Bruening, CA Loopstra, ...
BMC genomics 11 (1), 1-14, 2010
Comparative and functional analysis of intron-mediated enhancement signals reveals conserved features among plants
G Parra, K Bradnam, AB Rose, I Korf
Nucleic acids research 39 (13), 5328-5337, 2011
Long-Term Balancing Selection in LAD1 Maintains a Missense Trans-Species Polymorphism in Humans, Chimpanzees, and Bonobos
JC Teixeira, C De Filippo, A Weihmann, JR Meneu, F Racimo, ...
Molecular biology and evolution 32 (5), 1186-1196, 2015
Controlling for phylogenetic relatedness and evolutionary rates improves the discovery of associations between species’ phenotypic and genomic differences
X Prudent, G Parra, P Schwede, JG Roscito, M Hiller
Molecular biology and evolution 33 (8), 2135-2150, 2016
Gene finding in the chicken genome
E Eyras, A Reymond, R Castelo, JM Bye, F Camara, P Flicek, EJ Huckle, ...
BMC bioinformatics 6 (1), 1-12, 2005
SelenoDB 2.0: annotation of selenoprotein genes in animals and their genetic diversity in humans
F Romagné, D Santesmasses, L White, GK Sarangi, M Mariotti, R Hübler, ...
Nucleic acids research 42 (D1), D437-D443, 2014
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