| De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis BJ Haas, A Papanicolaou, M Yassour, M Grabherr, PD Blood, J Bowden, ... Nature protocols 8 (8), 1494-1512, 2013 | 8150 | 2013 |
| Systems survey of endocytosis by multiparametric image analysis C Collinet, M Stöter, CR Bradshaw, N Samusik, JC Rink, D Kenski, ... Nature 464 (7286), 243-249, 2010 | 483 | 2010 |
| Analysis of virtualization technologies for high performance computing environments AJ Younge, R Henschel, JT Brown, G Von Laszewski, J Qiu, GC Fox 2011 IEEE 4th International Conference on Cloud Computing, 9-16, 2011 | 345 | 2011 |
| SPEC OMP2012—an application benchmark suite for parallel systems using OpenMP MS Müller, J Baron, WC Brantley, H Feng, D Hackenberg, R Henschel, ... International Workshop on OpenMP, 223-236, 2012 | 113 | 2012 |
| The open diffusion data derivatives, brain data upcycling via integrated publishing of derivatives and reproducible open cloud services P Avesani, B McPherson, S Hayashi, CF Caiafa, R Henschel, ... Scientific data 6 (1), 69, 2019 | 102 | 2019 |
| SPEC ACCEL: A standard application suite for measuring hardware accelerator performance G Juckeland, W Brantley, S Chandrasekaran, B Chapman, S Che, ... International Workshop on Performance Modeling, Benchmarking and Simulation …, 2014 | 96 | 2014 |
| Trinity RNA-Seq assembler performance optimization R Henschel, M Lieber, LS Wu, PM Nista, BJ Haas, RD LeDuc Proceedings of the 1st Conference of the Extreme Science and Engineering …, 2012 | 89 | 2012 |
| Be smart against cancer! A school-based program covering cancer-related risk behavior F Stölzel, N Seidel, S Uhmann, M Baumann, H Berth, J Hoyer, G Ehninger BMC Public Health 14, 1-9, 2014 | 29 | 2014 |
| Demonstrating Lustre over a 100Gbps wide area network of 3,500 km R Henschel, S Simms, D Hancock, S Michael, T Johnson, N Heald, ... SC'12: Proceedings of the International Conference on High Performance …, 2012 | 28 | 2012 |
| First experiences in performance benchmarking with the new SPEChpc 2021 suites H Brunst, S Chandrasekaran, FM Ciorba, N Hagerty, R Henschel, ... 2022 22nd IEEE International Symposium on Cluster, Cloud and Internet …, 2022 | 24 | 2022 |
| Benchmarking Harp-DAAL: High performance hadoop on KNL clusters L Chen, B Peng, B Zhang, T Liu, Y Zou, L Jiang, R Henschel, C Stewart, ... 2017 IEEE 10th International Conference on Cloud Computing (CLOUD), 82-89, 2017 | 23 | 2017 |
| From describing to prescribing parallelism: Translating the SPEC ACCEL OpenACC suite to OpenMP target directives G Juckeland, O Hernandez, AC Jacob, D Neilson, VGV Larrea, S Wienke, ... International Conference on High Performance Computing, 470-488, 2016 | 22 | 2016 |
| Comparison of multi-sample variant calling methods for whole genome sequencing K Nho, JD West, H Li, R Henschel, MC Tavares, A Bharthur, MW Weiner, ... 2014 8th International Conference on Systems Biology (ISB), 59-62, 2014 | 22 | 2014 |
| ODI-Portal, Pipeline, and Archive (ODI-PPA): a web-based astronomical compute archive, visualization, and analysis service A Gopu, S Hayashi, MD Young, DR Harbeck, T Boroson, W Liu, R Kotulla, ... Software and Cyberinfrastructure for Astronomy III 9152, 120-139, 2014 | 22 | 2014 |
| brainlife. io: a decentralized and open-source cloud platform to support neuroscience research S Hayashi, BA Caron, AS Heinsfeld, S Vinci-Booher, B McPherson, ... Nature methods 21 (5), 809-813, 2024 | 20 | 2024 |
| SPEChpc 2021 benchmark suites for modern HPC systems J Li, A Bobyr, S Boehm, W Brantley, H Brunst, A Cavelan, ... Companion of the 2022 ACM/SPEC International Conference on Performance …, 2022 | 15 | 2022 |
| HarpLDA+: Optimizing latent dirichlet allocation for parallel efficiency B Peng, B Zhang, L Chen, M Avram, R Henschel, C Stewart, S Zhu, ... 2017 IEEE International Conference on Big Data (Big Data), 243-252, 2017 | 13 | 2017 |
| Hpchadoop: A framework to run hadoop on cray x-series supercomputers S Michael, A Thota, R Henschel Cray USer Group (CUG), 2014 | 12 | 2014 |
| Performance and quality of service of data and video movement over a 100 Gbps testbed M Kluge, S Simms, T William, R Henschel, A Georgi, C Meyer, MS Mueller, ... Future Generation Computer Systems 29 (1), 230-240, 2013 | 9 | 2013 |
| Exploiting hpc resources for the 3d-time series analysis of caries lesion activity H Zhang, H Li, MJ Boyles, R Henschel, EK Kohara, M Ando Proceedings of the 1st Conference of the Extreme Science and Engineering …, 2012 | 9 | 2012 |
