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Aaron Taudt
Aaron Taudt
Bioinformatics
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Rate, spectrum, and evolutionary dynamics of spontaneous epimutations
A Van Der Graaf, R Wardenaar, DA Neumann, A Taudt, RG Shaw, ...
Proceedings of the National Academy of Sciences 112 (21), 6676-6681, 2015
326*2015
Single-cell sequencing reveals karyotype heterogeneity in murine and human malignancies
B Bakker, A Taudt, ME Belderbos, D Porubsky, DCJ Spierings, ...
Genome biology 17, 1-15, 2016
2302016
Histone propionylation is a mark of active chromatin
AF Kebede, A Nieborak, LZ Shahidian, S Le Gras, F Richter, DA Gomez, ...
Nature structural & molecular biology 24 (12), 1048-1056, 2017
1712017
Genetic sources of population epigenomic variation
A Taudt, M Colomé-Tatché, F Johannes
Nature Reviews Genetics 17 (6), 319-332, 2016
1672016
Single-cell whole genome sequencing reveals no evidence for common aneuploidy in normal and Alzheimer’s disease neurons
H van den Bos, DCJ Spierings, A Taudt, B Bakker, D Porubský, ...
Genome biology 17, 1-9, 2016
1572016
MLL2 conveys transcription-independent H3K4 trimethylation in oocytes
CW Hanna, A Taudt, J Huang, L Gahurova, A Kranz, S Andrews, W Dean, ...
Nature structural & molecular biology 25 (1), 73-82, 2018
1452018
Histone methylation changes are required for life cycle progression in the human parasite Schistosoma mansoni
D Roquis, A Taudt, KK Geyer, G Padalino, KF Hoffmann, N Holroyd, ...
PLoS pathogens 14 (5), e1007066, 2018
542018
Quantification of aneuploidy in mammalian systems
H van den Bos, B Bakker, A Taudt, V Guryev, M Colomé-Tatché, ...
Cellular Senescence: Methods and Protocols, 159-190, 2019
432019
histoneHMM: Differential analysis of histone modifications with broad genomic footprints
M Heinig, M Colomé-Tatché, A Taudt, C Rintisch, S Schafer, M Pravenec, ...
BMC bioinformatics 16, 1-15, 2015
372015
breakpointR: an R/Bioconductor package to localize strand state changes in Strand-seq data
D Porubsky, AD Sanders, A Taudt, M Colomé-Tatché, PM Lansdorp, ...
Bioinformatics 36 (4), 1260-1261, 2020
342020
chromstaR: Tracking combinatorial chromatin state dynamics in space and time
A Taudt, MA Nguyen, M Heinig, F Johannes, M Colome-Tatche
bioRxiv, 038612, 2016
302016
METHimpute: imputation-guided construction of complete methylomes from WGBS data
A Taudt, D Roquis, A Vidalis, R Wardenaar, F Johannes, ...
BMC genomics 19, 1-14, 2018
292018
Copy number alterations assessed at the single-cell level revealed mono-and polyclonal seeding patterns of distant metastasis in a small-cell lung cancer patient
P Ferronika, H Van Den Bos, A Taudt, DCJ Spierings, A Saber, ...
Annals of Oncology 28 (7), 1668-1670, 2017
252017
The flexible rare event sampling harness system (freshs)
K Kratzer, JT Berryman, A Taudt, J Zeman, A Arnold
Computer Physics Communications 185 (7), 1875-1885, 2014
242014
Single cell sequencing reveals karyotype heterogeneity in murine and human tumours
B Bakker, A Taudt, M Belderbos, D Porubsky, D Spierings, T De
Genome Biol 17, 1-15, 2016
212016
Simulation of protein association: Kinetic pathways towards crystal contacts
A Taudt, A Arnold, J Pleiss
Physical Review E 91 (3), 033311, 2015
202015
Hidden Markov models for the analysis of next-generation-sequencing data
AS Taudt
32018
A quick introduction to AneuFinder
A Taudt
2019
The chromstaR user’s guide
A Taudt
2019
Abstracts from the 3rd Conference on Aneuploidy and Cancer: Clinical and Experimental Aspects: Berkeley, CA, USA. 26-29 January 2017
A Cornish-Bowden, A Cornish-Bowden, D Rasnick, HH Heng, S Horne, ...
Molecular cytogenetics 10, 77-94, 2017
2017
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Articles 1–20