| The binary protein-protein interaction landscape of Escherichia coli SV Rajagopala, P Sikorski, A Kumar, R Mosca, J Vlasblom, R Arnold, ... Nature biotechnology 32 (3), 285-290, 2014 | 267 | 2014 |
| Sequencing of mitochondrial genomes of nine Aspergillus and Penicillium species identifies mobile introns and accessory genes as main sources of genome size … V Joardar, NF Abrams, J Hostetler, PJ Paukstelis, S Pakala, SB Pakala, ... BMC genomics 13, 1-12, 2012 | 128 | 2012 |
| Mobile elements and mitochondrial genome expansion in the soil fungus and potato pathogen Rhizoctonia solani AG-3 L Losada, SB Pakala, ND Fedorova, V Joardar, SA Shabalina, J Hostetler, ... FEMS microbiology letters 352 (2), 165-173, 2014 | 101 | 2014 |
| COVID‐19 severity from Omicron and Delta SARS‐CoV‐2 variants JO Wrenn, SB Pakala, G Vestal, MH Shilts, HM Brown, SM Bowen, ... Influenza and other respiratory viruses 16 (5), 832-836, 2022 | 86 | 2022 |
| Draft genome sequence of the plant-pathogenic soil fungus Rhizoctonia solani anastomosis group 3 strain Rhs1AP MA Cubeta, E Thomas, RA Dean, S Jabaji, SM Neate, S Tavantzis, ... Genome announcements 2 (5), 10.1128/genomea. 01072-14, 2014 | 59 | 2014 |
| Generation of a Novel SARS-CoV-2 Sub-genomic RNA Due to the R203K/G204R Variant in Nucleocapsid: Homologous Recombination has Potential to Change SARS-CoV-2 at Both Protein and … MS Leary S, Gaudieri S, Parker MD, Chopra A, James I, Pakala S, Alves E ... Pathogens and Immunity 6 (2), 27 - 49, 2021 | 58 | 2021 |
| Genetic Analysis Using an Isogenic Mating Pair of Aspergillus fumigatus Identifies Azole Resistance Genes and Lack of MAT Locus's Role in Virulence L Losada, JA Sugui, MA Eckhaus, YC Chang, S Mounaud, A Figat, ... PLOS Pathogens 11 (4), 2015 | 57 | 2015 |
| Perturbations in small molecule synthesis uncovers an iron-responsive secondary metabolite network in Aspergillus fumigatus P Wiemann, BE Lechner, JA Baccile, TA Velk, WB Yin, JW Bok, S Pakala, ... Frontiers in microbiology 5, 530, 2014 | 55 | 2014 |
| Distinct amino acid and lipid perturbations characterize acute versus chronic malaria RJ Cordy, R Patrapuvich, LN Lili, M Cabrera-Mora, JT Chien, GK Tharp, ... JCI insight 4 (9), 2019 | 44 | 2019 |
| PacBio assembly of a Plasmodium knowlesi genome sequence with Hi-C correction and manual annotation of the SICAvar gene family SA Lapp, JA Geraldo, JT Chien, F Ay, SB Pakala, G Batugedara, ... Parasitology 145 (1), 71-84, 2018 | 41 | 2018 |
| DC ENaC-dependent inflammasome activation contributes to salt-sensitive hypertension A Pitzer, F Elijovich, CL Laffer, LA Ertuglu, M Sahinoz, M Saleem, ... Circulation research 131 (4), 328-344, 2022 | 39 | 2022 |
| High-Quality Genome Assembly and Annotation for Plasmodium coatneyi, Generated Using Single-Molecule Real-Time PacBio Technology JT Chien, SB Pakala, JA Geraldo, SA Lapp, JC Humphrey, JW Barnwell, ... Genome Announcements 4 (5), e00883-16, 2016 | 34 | 2016 |
| Large-Scale Transcriptional Response to Hypoxia in Aspergillus fumigatus Observed Using RNAseq Identifies a Novel Hypoxia Regulated ncRNA L Losada, BM Barker, S Pakala, S Pakala, V Joardar, N Zafar, S Mounaud, ... Mycopathologia 178, 331-339, 2014 | 32 | 2014 |
| Metatranscriptomics to characterize respiratory virome, microbiome, and host response directly from clinical samples SV Rajagopala, NG Bakhoum, SB Pakala, MH Shilts, C Rosas-Salazar, ... Cell reports methods 1 (6), 2021 | 31 | 2021 |
| Structural analysis of the Rhizoctonia solani agglutinin reveals a domain‐swapping dimeric assembly VT Skamnaki, WJ Peumans, AL Kantsadi, MA Cubeta, K Plas, S Pakala, ... The FEBS Journal 280 (8), 1750-1763, 2013 | 23 | 2013 |
| Integrative analysis associates monocytes with insufficient erythropoiesis during acute Plasmodium cynomolgi malaria in rhesus macaques Y Tang, CJ Joyner, M Cabrera-Mora, CL Saney, SA Lapp, MV Nural, ... Malaria journal 16, 1-16, 2017 | 22 | 2017 |
| Comparative transcriptomics and metabolomics in a rhesus macaque drug administration study KJ Lee, W Yin, D Arafat, Y Tang, K Uppal, VL Tran, M Cabrera-Mora, ... Frontiers in cell and developmental biology 2, 54, 2014 | 21 | 2014 |
| Molecular signature of postmortem lung tissue from COVID-19 patients suggests distinct trajectories driving mortality A Budhraja, A Basu, A Gheware, D Abhilash, S Rajagopala, S Pakala, ... Disease Models & Mechanisms 15 (5), dmm049572, 2022 | 18 | 2022 |
| Three adjacent nucleotide changes spanning two residues in SARS-CoV-2 nucleoprotein: possible homologous recombination from the transcription-regulating sequence S Leary, S Gaudieri, A Chopra, S Pakala, E Alves, M John, S Das, ... bioRxiv 10 (2020.04), 10.029454, 2020 | 18 | 2020 |
| Cross-reaction between Formosan termite (Coptotermes formosanus) proteins and cockroach allergens CP Mattison, T Khurana, MR Tarver, CB Florane, CC Grimm, SB Pakala, ... PLoS One 12 (8), e0182260, 2017 | 18 | 2017 |
