James McInerney

Cited by

	All	Since 2016
Citations	6987	2904
h-index	43	28
i10-index	77	44

680

340

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510

19981999200020012002200320042005200620072008200920102011201220132014201520162017201820192020202127 33 43 25 45 64 83 156 222 286 273 305 320 353 323 371 484 554 542 668 607 515 551 17

Co-authors

Chris CreeveyProfessor of Computational Biology, Queen’s University BelfastVerified email at qub.ac.uk
Davide PisaniProfessor of Phylogenomics. Schools of Biological & Earth Sciences. University of Bristol (UK)Verified email at bristol.ac.uk
Dr Mary J. O'ConnellThe University Of NottinghamVerified email at nottingham.ac.uk
Thomas KeaneHead of European Genome-phenome Archive + European Variation Archive, EMBL-EBIVerified email at ebi.ac.uk
Thomas J. NaughtonNational University of Ireland MaynoothVerified email at cs.nuim.ie
Mark WilkinsonThe Natural History MuseumVerified email at nhm.ac.uk
David FitzpatrickMaynooth UniversityVerified email at mu.ie
Eric BaptesteCNRS, Université Pierre et Marie CurieVerified email at snv.jussieu.fr
James CottonSenior Staff Scientist, Wellcome Trust Sanger InstituteVerified email at sanger.ac.uk
Philippe LopezProfesseur de Biologie des Systèmes, Sorbonne UniversitéVerified email at upmc.fr
Giddy LandanChristian-Albrechts-University KielVerified email at ifam.uni-kiel.de
William MartinProfessor of Molecular Evolution, University of DüsseldorfVerified email at hhu.de
Shijulal Nelson-SathiRajiv Gandhi Centre for Biotechnology (RGCB) , Trivandrum, IndiaVerified email at rgcb.res.in
Martin EmbleyProfessor of Molecular Evolution, Newcastle UniversityVerified email at ncl.ac.uk
Alan McNallyUniversity of BirminghamVerified email at bham.ac.uk
Filipa L. SousaDepartment of Functional and Evolutionary Ecology, University of ViennaVerified email at univie.ac.at
David BryantUniversity of OtagoVerified email at otago.ac.nz
Peter G. FosterNatural History Museum, LondonVerified email at nhm.ac.uk
Prof. Mike SteelUniversity of Canterbury, New ZealandVerified email at canterbury.ac.nz
David Alvarez-PonceAssociate Professor, University of Nevada, RenoVerified email at unr.edu

James McInerney

Head of School of Life Sciences, University of Nottingham

Verified email at nottingham.ac.uk - Homepage

pangenomes prokaryotes eukaryotes phylogenetics


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Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified T Keane, C Creevey, M Pentony, T Naughton, J Mclnerney BMC evolutionary biology 6 (1), 29, 2006	1062	2006
Replicational and transcriptional selection on codon usage in Borrelia burgdorferi JO McInerney Proceedings of the National Academy of Sciences 95 (18), 10698-10703, 1998	264	1998
Population genomics reveal recent speciation and rapid evolutionary adaptation in polar bears S Liu, ED Lorenzen, M Fumagalli, B Li, K Harris, Z Xiong, L Zhou, ... Cell 157 (4), 785-794, 2014	253	2014
GCUA: general codon usage analysis. JO McInerney Bioinformatics (Oxford, England) 14 (4), 372-373, 1998	238	1998
Endosymbiotic origin and differential loss of eukaryotic genes C Ku, S Nelson-Sathi, M Roettger, FL Sousa, PJ Lockhart, D Bryant, ... Nature 524 (7566), 427-432, 2015	228	2015
Acquisition of 1,000 eubacterial genes physiologically transformed a methanogen at the origin of Haloarchaea S Nelson-Sathi, T Dagan, G Landan, A Janssen, M Steel, JO McInerney, ... Proceedings of the National Academy of Sciences 109 (50), 20537-20542, 2012	214	2012
Supertrees disentangle the chimerical origin of eukaryotic genomes D Pisani, JA Cotton, JO McInerney Molecular Biology and Evolution 24 (8), 1752-1760, 2007	206	2007
Clann: investigating phylogenetic information through supertree analyses CJ Creevey, JO McInerney Bioinformatics 21 (3), 390-392, 2005	205	2005
Origins of major archaeal clades correspond to gene acquisitions from bacteria S Nelson-Sathi, FL Sousa, M Roettger, N Lozada-Chávez, T Thiergart, ... Nature 517 (7532), 77-80, 2015	202	2015
Why prokaryotes have pangenomes JO McInerney, A McNally, MJ O'Connell Nature Microbiology 2 (4), 1-5, 2017	169	2017
Networks: expanding evolutionary thinking E Bapteste, L van Iersel, A Janke, S Kelchner, S Kelk, JO McInerney, ... Trends in Genetics 29 (8), 439-441, 2013	152	2013
Genome phylogenies indicate a meaningful α-proteobacterial phylogeny and support a grouping of the mitochondria with the Rickettsiales DA Fitzpatrick, CJ Creevey, JO McInerney Molecular Biology and Evolution 23 (1), 74-85, 2006	144	2006
The Opisthokonta and the Ecdysozoa may not be clades: stronger support for the grouping of plant and animal than for animal and fungi and stronger support for the Coelomata … GK Philip, CJ Creevey, JO McInerney Molecular biology and evolution 22 (5), 1175-1184, 2005	144	2005
Metazoan opsin evolution reveals a simple route to animal vision R Feuda, SC Hamilton, JO McInerney, D Pisani Proceedings of the National Academy of Sciences 109 (46), 18868-18872, 2012	141	2012
Does a tree–like phylogeny only exist at the tips in the prokaryotes? CJ Creevey, DA Fitzpatrick, GK Philip, RJ Kinsella, MJ O'Connell, ... Proceedings of the Royal Society of London. Series B: Biological Sciences …, 2004	136	2004
TOPD/FMTS: a new software to compare phylogenetic trees P Puigbò, S Garcia-Vallvé, JO McInerney Bioinformatics 23 (12), 1556-1558, 2007	135	2007
A method for inferring the rate of evolution of homologous characters that can potentially improve phylogenetic inference, resolve deep divergence and correct systematic biases CA Cummins, JO McInerney Systematic biology 60 (6), 833-844, 2011	124	2011
Recovery and phylogenetic analysis of novel archaeal rRNA sequences from a deep-sea deposit feeder. JO McInerney, M Wilkinson, JW Patching, TM Embley, R Powell Applied and Environmental Microbiology 61 (4), 1646-1648, 1995	122	1995
The hybrid nature of the Eukaryota and a consilient view of life on Earth JO McInerney, MJ O'connell, D Pisani Nature Reviews Microbiology 12 (6), 449-455, 2014	117	2014
Combined analysis of variation in core, accessory and regulatory genome regions provides a super-resolution view into the evolution of bacterial populations A McNally, Y Oren, D Kelly, B Pascoe, S Dunn, T Sreecharan, M Vehkala, ... PLoS genetics 12 (9), e1006280, 2016	114	2016

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