Yaoqi Zhou

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Yuedong YangSchool of Data and Computer Science, Sun Yat-sen UniversityVerified email at mail.sysu.edu.cn
Hongyi ZhouGeorgia Institute of TechnologyVerified email at gatech.edu
Kuldip PaliwalProfessor (Chair, Communication and Information Engineering), Griffith University, BrisbaneVerified email at griffith.edu.au
Chi ZhangSchool of Biological Sciences, University of Nebraska, Lincoln, NEVerified email at unl.edu
Song LiuProfessor, Director of Bioinformatics, Roswell Park Comprehensive Cancer CenterVerified email at roswellpark.org
Eshel FaraggiAdjunct Professor, Physics, IUPUI; Physicist, Research and Information Systems; Consultant, BattelleVerified email at iupui.edu
Huiying ZhaoSun Yat-sen Memorial Hospital, Sun Yat-sen UniversityVerified email at mail.sysu.edu.cn
Carol HallNorth Carolina State UniversityVerified email at ncsu.edu
Rhys HeffernanGriffith UniversityVerified email at griffith.edu.au
Jack HansonSignal Processing Laboratory, Griffith UniversityVerified email at griffithuni.edu.au
Thomas LitfinPostdoctoral Research Fellow, Griffith UniversityVerified email at griffithuni.edu.au
James LyonsUnaffiliatedVerified email at griffithuni.edu.au
Abdollah 'Iman' DehzangiAssistant Professor at the Department of Computer Science, Rutgers UniversityVerified email at rutgers.edu
Abdul SattarProfessor of Computer Science, Griffith UniversityVerified email at griffith.edu.au
Tuo ZhangInstructor, Weill Cornell Medical CollegeVerified email at med.cornell.edu
bin xueUniversity of South FloridaVerified email at usf.edu
Alok SharmaSenior Scientist at RIKEN; University of the South Pacific; Griffith UniversityVerified email at griffith.edu.au
Lukasz KurganComputer Science, Virginia Commonwealth UniversityVerified email at vcu.edu
Gazelle TaherzadehUniversity of MarylandVerified email at umd.edu
David N. CooperProfessor of Human Molecular Genetics, Cardiff University, UKVerified email at cardiff.ac.uk

Yaoqi Zhou

Professor, Institute for Glycomics and School of Information and Communication Technology, Griffith

Verified email at griffith.edu.au - Homepage

Computational Biology Bioinformatics Biophysics Molecular Biology Cellular Biology


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Distance‐scaled, finite ideal‐gas reference state improves structure‐derived potentials of mean force for structure selection and stability prediction H Zhou, Y Zhou Protein science 11 (11), 2714-2726, 2002	979	2002
Interpreting the folding kinetics of helical proteins Y Zhou, M Karplus Nature 401 (6751), 400-403, 1999	311	1999
Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and … Y Yang, E Faraggi, H Zhao, Y Zhou Bioinformatics 27 (15), 2076-2082, 2011	294	2011
A knowledge-based energy function for protein-ligand, protein-protein, and protein-DNA complexes C Zhang, S Liu, Q Zhu, Y Zhou Journal of medicinal chemistry 48 (7), 2325-2335, 2005	287	2005
Improving prediction of secondary structure, local backbone angles and solvent accessible surface area of proteins by iterative deep learning R Heffernan, K Paliwal, J Lyons, A Dehzangi, A Sharma, J Wang, A Sattar, ... Scientific reports 5 (1), 1-11, 2015	284	2015
Protein binding site prediction using an empirical scoring function S Liang, C Zhang, S Liu, Y Zhou Nucleic acids research 34 (13), 3698-3707, 2006	274	2006
Fold recognition by combining sequence profiles derived from evolution and from depth‐dependent structural alignment of fragments H Zhou, Y Zhou Proteins: Structure, Function, and Bioinformatics 58 (2), 321-328, 2005	251	2005
SPINE X: improving protein secondary structure prediction by multistep learning coupled with prediction of solvent accessible surface area and backbone torsion angles E Faraggi, T Zhang, Y Yang, L Kurgan, Y Zhou Journal of computational chemistry 33 (3), 259-267, 2012	237	2012
Specific interactions for ab initio folding of protein terminal regions with secondary structures Y Yang, Y Zhou Proteins: Structure, Function, and Bioinformatics 72 (2), 793-803, 2008	233	2008
Equilibrium thermodynamics of homopolymers and clusters: molecular dynamics and Monte Carlo simulations of systems with square-well interactions Y Zhou, M Karplus, JM Wichert, CK Hall The Journal of chemical physics 107 (24), 10691-10708, 1997	227	1997
The distance fluctuation criterion for melting: Comparison of square-well and Morse potential models for clusters and homopolymers Y Zhou, M Karplus, KD Ball, RS Berry The Journal of chemical physics 116 (5), 2323-2329, 2002	216	2002
Single‐body residue‐level knowledge‐based energy score combined with sequence‐profile and secondary structure information for fold recognition H Zhou, Y Zhou Proteins: Structure, Function, and Bioinformatics 55 (4), 1005-1013, 2004	209	2004
First-order disorder-to-order transition in an isolated homopolymer model Y Zhou, CK Hall, M Karplus Physical review letters 77 (13), 2822, 1996	207	1996
Folding thermodynamics of a model three-helix-bundle protein Y Zhou, M Karplus Proceedings of the National Academy of Sciences 94 (26), 14429-14432, 1997	205	1997
Folding rate prediction using total contact distance H Zhou, Y Zhou Biophysical journal 82 (1), 458-463, 2002	204	2002
Real-time reliable determination of binding kinetics of DNA hybridization using a multi-channel graphene biosensor S Xu, J Zhan, B Man, S Jiang, W Yue, S Gao, C Guo, H Liu, Z Li, J Wang, ... Nature communications 8 (1), 1-10, 2017	201	2017
A physical reference state unifies the structure‐derived potential of mean force for protein folding and binding S Liu, C Zhang, H Zhou, Y Zhou Proteins: Structure, Function, and Bioinformatics 56 (1), 93-101, 2004	187	2004
Structural insights into the histone H1-nucleosome complex BR Zhou, H Feng, H Kato, L Dai, Y Yang, Y Zhou, Y Bai Proceedings of the National Academy of Sciences 110 (48), 19390-19395, 2013	180	2013
Capturing non-local interactions by long short-term memory bidirectional recurrent neural networks for improving prediction of protein secondary structure, backbone angles … R Heffernan, Y Yang, K Paliwal, Y Zhou Bioinformatics 33 (18), 2842-2849, 2017	177	2017
Native proteins are surface-molten solids: application of the Lindemann criterion for the solid versus liquid state Y Zhou, D Vitkup, M Karplus Journal of molecular biology 285 (4), 1371-1375, 1999	175	1999

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