Yaoqi Zhou

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Yuedong YangSchool of Computer Science and Engineering, Sun Yat-sen UniversityVerified email at mail.sysu.edu.cn
Kuldip PaliwalProfessor (Chair, Communication and Information Engineering), Griffith University, BrisbaneVerified email at griffith.edu.au
Hongyi ZhouGeorgia Institute of TechnologyVerified email at gatech.edu
Huiying ZhaoSun Yat-sen Memorial Hospital, Sun Yat-sen UniversityVerified email at mail.sysu.edu.cn
Chi ZhangSchool of Biological Sciences, University of Nebraska, Lincoln, NEVerified email at unl.edu
Eshel FaraggiAdjunct Professor, Physics, IUPUI; Physicist, Research and Information Systems; Consultant, BattelleVerified email at iupui.edu
Song LiuProfessor & Vice Chair, Director of Bioinformatics, Roswell Park Comprehensive Cancer CenterVerified email at roswellpark.org
Jack HansonSignal Processing Laboratory, Griffith UniversityVerified email at griffithuni.edu.au
Rhys HeffernanGriffith UniversityVerified email at griffith.edu.au
Thomas LitfinPostdoctoral Research Fellow, Griffith UniversityVerified email at griffithuni.edu.au
Carol HallNorth Carolina State UniversityVerified email at ncsu.edu
James LyonsUnaffiliatedVerified email at griffithuni.edu.au
Iman 'Abdollah' DehzangiAssistant Professor at the Department of Computer Science, Rutgers UniversityVerified email at rutgers.edu
Abdul SattarProfessor of Computer Science, Griffith UniversityVerified email at griffith.edu.au
Jaswinder SinghSignal Processing Laboratory, Griffith UniversityVerified email at griffithuni.edu.au
Tuo ZhangInstructor, Weill Cornell Medical CollegeVerified email at med.cornell.edu
bin xueUniversity of South FloridaVerified email at usf.edu
Alok SharmaSenior Scientist at RIKEN; University of the South Pacific; Griffith UniversityVerified email at griffith.edu.au
Gazelle TaherzadehWilkes UniversityVerified email at wilkes.edu
Lukasz KurganComputer Science, Virginia Commonwealth UniversityVerified email at vcu.edu

Yaoqi Zhou

Senior Principal Investigator, Institute for Systems & Physical Biology, Shenzhen Bay Laboratory

Verified email at szbl.ac.cn - Homepage

Computational Biology Bioinformatics Biophysics Molecular Biology Cellular Biology


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Distance‐scaled, finite ideal‐gas reference state improves structure‐derived potentials of mean force for structure selection and stability prediction H Zhou, Y Zhou Protein science 11 (11), 2714-2726, 2002	1025	2002
Improving prediction of secondary structure, local backbone angles and solvent accessible surface area of proteins by iterative deep learning R Heffernan, K Paliwal, J Lyons, A Dehzangi, A Sharma, J Wang, A Sattar, ... Scientific reports 5 (1), 1-11, 2015	330	2015
Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and … Y Yang, E Faraggi, H Zhao, Y Zhou Bioinformatics 27 (15), 2076-2082, 2011	327	2011
Interpreting the folding kinetics of helical proteins Y Zhou, M Karplus Nature 401 (6751), 400-403, 1999	318	1999
A knowledge-based energy function for protein-ligand, protein-protein, and protein-DNA complexes C Zhang, S Liu, Q Zhu, Y Zhou Journal of medicinal chemistry 48 (7), 2325-2335, 2005	304	2005
Protein binding site prediction using an empirical scoring function S Liang, C Zhang, S Liu, Y Zhou Nucleic acids research 34 (13), 3698-3707, 2006	285	2006
Real-time reliable determination of binding kinetics of DNA hybridization using a multi-channel graphene biosensor S Xu, J Zhan, B Man, S Jiang, W Yue, S Gao, C Guo, H Liu, Z Li, J Wang, ... Nature communications 8 (1), 1-10, 2017	278	2017
Fold recognition by combining sequence profiles derived from evolution and from depth‐dependent structural alignment of fragments H Zhou, Y Zhou Proteins: Structure, Function, and Bioinformatics 58 (2), 321-328, 2005	269	2005
SPINE X: improving protein secondary structure prediction by multistep learning coupled with prediction of solvent accessible surface area and backbone torsion angles E Faraggi, T Zhang, Y Yang, L Kurgan, Y Zhou Journal of computational chemistry 33 (3), 259-267, 2012	260	2012
Capturing non-local interactions by long short-term memory bidirectional recurrent neural networks for improving prediction of protein secondary structure, backbone angles … R Heffernan, Y Yang, K Paliwal, Y Zhou Bioinformatics 33 (18), 2842-2849, 2017	259	2017
Specific interactions for ab initio folding of protein terminal regions with secondary structures Y Yang, Y Zhou Proteins: Structure, Function, and Bioinformatics 72 (2), 793-803, 2008	253	2008
Equilibrium thermodynamics of homopolymers and clusters: molecular dynamics and Monte Carlo simulations of systems with square-well interactions Y Zhou, M Karplus, JM Wichert, CK Hall The Journal of chemical physics 107 (24), 10691-10708, 1997	231	1997
The distance fluctuation criterion for melting: Comparison of square-well and Morse potential models for clusters and homopolymers Y Zhou, M Karplus, KD Ball, RS Berry The Journal of chemical physics 116 (5), 2323-2329, 2002	230	2002
Improving protein disorder prediction by deep bidirectional long short-term memory recurrent neural networks J Hanson, Y Yang, K Paliwal, Y Zhou Bioinformatics 33 (5), 685-692, 2017	221	2017
Single‐body residue‐level knowledge‐based energy score combined with sequence‐profile and secondary structure information for fold recognition H Zhou, Y Zhou Proteins: Structure, Function, and Bioinformatics 55 (4), 1005-1013, 2004	216	2004
First-order disorder-to-order transition in an isolated homopolymer model Y Zhou, CK Hall, M Karplus Physical review letters 77 (13), 2822, 1996	214	1996
Folding rate prediction using total contact distance H Zhou, Y Zhou Biophysical journal 82 (1), 458-463, 2002	212	2002
Folding thermodynamics of a model three-helix-bundle protein Y Zhou, M Karplus Proceedings of the National Academy of Sciences 94 (26), 14429-14432, 1997	207	1997
A physical reference state unifies the structure‐derived potential of mean force for protein folding and binding S Liu, C Zhang, H Zhou, Y Zhou Proteins: Structure, Function, and Bioinformatics 56 (1), 93-101, 2004	203	2004
Structural insights into the histone H1-nucleosome complex BR Zhou, H Feng, H Kato, L Dai, Y Yang, Y Zhou, Y Bai Proceedings of the National Academy of Sciences 110 (48), 19390-19395, 2013	200	2013

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