Yaoqi Zhou - Google Scholar Citations

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Co-authors

Yuedong YangSchool of Data and Computer Science, Sun Yat-sen UniversityVerified email at mail.sysu.edu.cn
Hongyi ZhouGeorgia Institute of TechnologyVerified email at gatech.edu
Chi ZhangSchool of Biological Sciences, University of Nebraska, Lincoln, NEVerified email at unl.edu
Song LiuProfessor, Director of Bioinformatics, Roswell Park Comprehensive Cancer CenterVerified email at roswellpark.org
Eshel FaraggiAdjunct Professor, Physics, IUPUI; Physicist, Research and Information Systems; Consultant, BattelleVerified email at iupui.edu
Kuldip PaliwalProfessor (Chair, Communication and Information Engineering), Griffith University, BrisbaneVerified email at griffith.edu.au
Carol HallNorth Carolina State UniversityVerified email at ncsu.edu
Rhys HeffernanGriffith UniversityVerified email at griffith.edu.au
James LyonsUnaffiliatedVerified email at griffithuni.edu.au
Abdollah 'Iman' DehzangiAssistant Professor at Department of Computer Science, Morgan State UniversityVerified email at morgan.edu
Abdul SattarProfessor of Computer Science, Griffith UniversityVerified email at griffith.edu.au
bin xueUniversity of South FloridaVerified email at usf.edu
Tuo ZhangSenior Research Associate, Weill Cornell Medical CollegeVerified email at med.cornell.edu
Jack HansonSignal Processing Laboratory, Griffith UniversityVerified email at griffithuni.edu.au
Alok SharmaSenior Scientist at RIKEN; University of the South Pacific; Griffith UniversityVerified email at griffith.edu.au
David N. CooperProfessor of Human Molecular Genetics, Cardiff University, UKVerified email at cardiff.ac.uk
Liang DaiCity University of Hong Kong; National University of Singapore ; Indiana University; MIT;Verified email at cityu.edu.hk
Lukasz KurganComputer Science, Virginia Commonwealth UniversityVerified email at vcu.edu
Ghazaleh TaherzadehGriffith UniversityVerified email at griffithuni.edu.au
A. Keith DunkerProfessor of Biochemistry,Indiana University School of MedicineVerified email at iupui.edu

Yaoqi Zhou

Professor, Institute for Glycomics and School of Information and Communication Technology, Griffith

Verified email at griffith.edu.au - Homepage

Computational Biology Bioinformatics Biophysics Molecular Biology Cellular Biology


Title	Cited by	Year
Distance‐scaled, finite ideal‐gas reference state improves structure‐derived potentials of mean force for structure selection and stability prediction H Zhou, Y Zhou Protein science 11 (11), 2714-2726, 2002	905	2002
Interpreting the folding kinetics of helical proteins Y Zhou, M Karplus Nature 401 (6751), 400-403, 1999	302	1999
A knowledge-based energy function for protein-ligand, protein-protein, and protein-DNA complexes C Zhang, S Liu, Q Zhu, Y Zhou Journal of medicinal chemistry 48 (7), 2325-2335, 2005	266	2005
Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and … Y Yang, E Faraggi, H Zhao, Y Zhou Bioinformatics 27 (15), 2076-2082, 2011	243	2011
Fold recognition by combining sequence profiles derived from evolution and from depth‐dependent structural alignment of fragments H Zhou, Y Zhou Proteins: Structure, Function, and Bioinformatics 58 (2), 321-328, 2005	241	2005
Protein binding site prediction using an empirical scoring function S Liang, C Zhang, S Liu, Y Zhou Nucleic acids research 34 (13), 3698-3707, 2006	240	2006
Equilibrium thermodynamics of homopolymers and clusters: molecular dynamics and Monte Carlo simulations of systems with square-well interactions Y Zhou, M Karplus, JM Wichert, CK Hall The Journal of chemical physics 107 (24), 10691-10708, 1997	225	1997
Improving prediction of secondary structure, local backbone angles, and solvent accessible surface area of proteins by iterative deep learning R Heffernan, K Paliwal, J Lyons, A Dehzangi, A Sharma, J Wang, A Sattar, ... Scientific reports 5, 11476, 2015	211	2015
The distance fluctuation criterion for melting: Comparison of square-well and Morse potential models for clusters and homopolymers Y Zhou, M Karplus, KD Ball, RS Berry The Journal of chemical physics 116 (5), 2323-2329, 2002	206	2002
SPINE X: improving protein secondary structure prediction by multistep learning coupled with prediction of solvent accessible surface area and backbone torsion angles E Faraggi, T Zhang, Y Yang, L Kurgan, Y Zhou Journal of computational chemistry 33 (3), 259-267, 2012	203	2012
First-order disorder-to-order transition in an isolated homopolymer model Y Zhou, CK Hall, M Karplus Physical review letters 77 (13), 2822, 1996	202	1996
Specific interactions for ab initio folding of protein terminal regions with secondary structures Y Yang, Y Zhou Proteins: Structure, Function, and Bioinformatics 72 (2), 793-803, 2008	200	2008
Folding thermodynamics of a model three-helix-bundle protein Y Zhou, M Karplus Proceedings of the National Academy of Sciences 94 (26), 14429-14432, 1997	200	1997
Single‐body residue‐level knowledge‐based energy score combined with sequence‐profile and secondary structure information for fold recognition H Zhou, Y Zhou Proteins: Structure, Function, and Bioinformatics 55 (4), 1005-1013, 2004	197	2004
Folding rate prediction using total contact distance H Zhou, Y Zhou Biophysical journal 82 (1), 458-463, 2002	193	2002
A physical reference state unifies the structure‐derived potential of mean force for protein folding and binding S Liu, C Zhang, H Zhou, Y Zhou Proteins: Structure, Function, and Bioinformatics 56 (1), 93-101, 2004	169	2004
Chemical association in simple models of molecular and ionic fluids G Stell, Y Zhou The Journal of Chemical Physics 91 (6), 3618-3623, 1989	163	1989
An accurate, residue‐level, pair potential of mean force for folding and binding based on the distance‐scaled, ideal‐gas reference state C Zhang, S Liu, H Zhou, Y Zhou Protein Science 13 (2), 400-411, 2004	162	2004
Native proteins are surface-molten solids: application of the Lindemann criterion for the solid versus liquid state Y Zhou, D Vitkup, M Karplus Journal of molecular biology 285 (4), 1371-1375, 1999	161	1999
Structural insights into the histone H1-nucleosome complex BR Zhou, H Feng, H Kato, L Dai, Y Yang, Y Zhou, Y Bai Proceedings of the National Academy of Sciences 110 (48), 19390-19395, 2013	138	2013

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