David Welch
David Welch
Senior Lecturer, Computational Evolution Group, Dept of Computer Science, University of Auckland
Verified email at auckland.ac.nz - Homepage
TitleCited byYear
Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems
T Toni, D Welch, N Strelkowa, A Ipsen, MPH Stumpf
Journal of the Royal Society Interface 6 (31), 187-202, 2008
9922008
Bayesian inference of sampled ancestor trees for epidemiology and fossil calibration
A Gavryushkina, D Welch, T Stadler, AJ Drummond
PLoS computational biology 10 (12), e1003919, 2014
1342014
From words to dates: water into wine, mathemagic or phylogenetic inference?
Q Atkinson, G Nicholls, D Welch, R Gray
Transactions of the Philological Society 103 (2), 193-219, 2005
1042005
Bayesian total-evidence dating reveals the recent crown radiation of penguins
A Gavryushkina, TA Heath, DT Ksepka, T Stadler, D Welch, AJ Drummond
Systematic biology 66 (1), 57-73, 2017
1012017
Efficient Bayesian inference under the structured coalescent
TG Vaughan, D Kühnert, A Popinga, D Welch, AJ Drummond
Bioinformatics 30 (16), 2272-2279, 2014
622014
Statistical inference to advance network models in epidemiology
D Welch, S Bansal, DR Hunter
Epidemics 3 (1), 38-45, 2011
582011
Bayesian inference for contact networks given epidemic data
C Groendyke, D Welch, DR Hunter
Scandinavian Journal of Statistics 38 (3), 600-616, 2011
572011
A network‐based analysis of the 1861 Hagelloch measles data
C Groendyke, D Welch, DR Hunter
Biometrics 68 (3), 755-765, 2012
522012
Protocols for sampling viral sequences to study epidemic dynamics
JC Stack, JD Welch, MJ Ferrari, BU Shapiro, BT Grenfell
Journal of the Royal Society Interface 7 (48), 1119-1127, 2010
432010
Integrating genealogy and epidemiology: the ancestral infection and selection graph as a model for reconstructing host virus histories
D Welch, GK Nicholls, A Rodrigo, W Solomon
Theoretical population biology 68 (1), 65-75, 2005
212005
Is network clustering detectable in transmission trees?
D Welch
Viruses 3 (6), 659-676, 2011
142011
Recursive algorithms for phylogenetic tree counting
A Gavryushkina, D Welch, AJ Drummond
Algorithms for Molecular Biology 8 (1), 26, 2013
112013
Inferring ancestral recombination graphs from bacterial genomic data
TG Vaughan, D Welch, AJ Drummond, PJ Biggs, T George, NP French
Genetics 205 (2), 857-870, 2017
92017
The transmission process: A combinatorial stochastic process for the evolution of transmission trees over networks
R Sainudiin, D Welch
Journal of theoretical biology 410, 137-170, 2016
8*2016
Demographic inference under the coalescent in a spatial continuum
S Guindon, H Guo, D Welch
Theoretical population biology 111, 43-50, 2016
72016
Modelling competition and dispersal in a statistical phylogeographic framework
L Ranjard, D Welch, M Paturel, S Guindon
Systematic biology 63 (5), 743-752, 2014
62014
Estimating Epidemic Incidence and Prevalence from Genomic Data
TG Vaughan, GE Leventhal, DA Rasmussen, AJ Drummond, D Welch, ...
Molecular Biology and Evolution, 2019
32019
Estimating epidemic incidence and prevalence from genomic data
TG Vaughan, GE Leventhal, DA Rasmussen, AJ Drummond, D Welch, ...
bioRxiv, 142570, 2017
32017
epinet: An R Package to Analyze Epidemics Spread across Contact Networks
C Groendyke, D Welch
Journal of Statistical Software 83 (11), 1-22, 2018
22018
TraitLab: A MatLab package for fitting and simulating binary tree-like data
GK Nicholls, RJ Ryder, D Welch
22013
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Articles 1–20