|A structural perspective on protein–protein interactions|
RB Russell, F Alber, P Aloy, FP Davis, D Korkin, M Pichaud, M Topf, A Sali
Current opinion in structural biology 14 (3), 313-324, 2004
|A soybean cyst nematode resistance gene points to a new mechanism of plant resistance to pathogens|
S Liu, PK Kandoth, SD Warren, G Yeckel, R Heinz, J Alden, C Yang, ...
Nature 492 (7428), 256-260, 2012
|Integrating diverse data for structure determination of macromolecular assemblies|
F Alber, F Förster, D Korkin, M Topf, A Sali
Annu. Rev. Biochem. 77, 443-477, 2008
|Structural genomics of SARS-CoV-2 indicates evolutionary conserved functional regions of viral proteins|
S Srinivasan, H Cui, Z Gao, M Liu, S Lu, W Mkandawire, O Narykov, ...
Viruses 12 (4), 360, 2020
|Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors for autism|
R Corominas, X Yang, GN Lin, S Kang, Y Shen, L Ghamsari, M Broly, ...
Nature communications 5 (1), 1-12, 2014
|Dual roles for the variable domain in protein trafficking and host‐specific recognition of Heterodera glycines CLE effector proteins|
J Wang, C Lee, A Replogle, S Joshi, D Korkin, R Hussey, TJ Baum, ...
New Phytologist 187 (4), 1003-1017, 2010
|Community‐wide evaluation of methods for predicting the effect of mutations on protein–protein interactions|
R Moretti, SJ Fleishman, R Agius, M Torchala, PA Bates, PL Kastritis, ...
Proteins: Structure, Function, and Bioinformatics 81 (11), 1980-1987, 2013
|Assessment of network module identification across complex diseases|
S Choobdar, ME Ahsen, J Crawford, M Tomasoni, T Fang, D Lamparter, ...
Nature methods 16 (9), 843-852, 2019
|Determining effects of non-synonymous SNPs on protein-protein interactions using supervised and semi-supervised learning|
N Zhao, JG Han, CR Shyu, D Korkin
PLoS Comput Biol 10 (5), e1003592, 2014
|A fast multiple longest common subsequence (MLCS) algorithm|
Q Wang, D Korkin, Y Shang
IEEE Transactions on Knowledge and Data Engineering 23 (3), 321-334, 2010
|Localization of protein‐binding sites within families of proteins|
D Korkin, FP Davis, A Sali
Protein Science 14 (9), 2350-2360, 2005
|Structural modeling of protein interactions by analogy: application to PSD-95|
D Korkin, FP Davis, F Alber, T Luong, MY Shen, V Lucic, MB Kennedy, ...
PLoS Comput Biol 2 (11), e153, 2006
|Long identical multispecies elements in plant and animal genomes|
J Reneker, E Lyons, GC Conant, JC Pires, M Freeling, CR Shyu, D Korkin
Proceedings of the National Academy of Sciences 109 (19), E1183-E1191, 2012
|Tel2 mediates activation and localization of ATM/Tel1 kinase to a double-strand break|
CM Anderson, D Korkin, DL Smith, S Makovets, JJ Seidel, A Sali, ...
Genes & development 22 (7), 854-859, 2008
|What is a structural representation?|
L Goldfarb, D Gay, O Golubitsky, D Korkin
|Evidence of positive selection in mitochondrial complexes I and V of the African elephant|
TM Finch, N Zhao, D Korkin, KH Frederick, LS Eggert
PLoS One 9 (4), e92587, 2014
|Literature mining of host–pathogen interactions: comparing feature-based supervised learning and language-based approaches|
T Thieu, S Joshi, S Warren, D Korkin
Bioinformatics 28 (6), 867-875, 2012
|Accelerating large-scale protein structure alignments with graphics processing units|
B Pang, N Zhao, M Becchi, D Korkin, CR Shyu
BMC research notes 5 (1), 1-11, 2012
|The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes|
R Masonbrink, TR Maier, U Muppirala, AS Seetharam, E Lord, PS Juvale, ...
BMC genomics 20 (1), 1-14, 2019
|The variation game: Cracking complex genetic disorders with NGS and omics data|
H Cui, A Dhroso, N Johnson, D Korkin
Methods 79, 18-31, 2015