Patrick M Shih
Patrick M Shih
UC Davis, Joint BioEnergy Institute, Lawrence Berkeley National Lab
Verified email at ucdavis.edu - Homepage
Title
Cited by
Cited by
Year
Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing
PM Shih, D Wu, A Latifi, SD Axen, DP Fewer, E Talla, A Calteau, F Cai, ...
Proceedings of the National Academy of Sciences 110 (3), 1053-1058, 2013
6532013
Direct identification of the Meloidogyne incognita secretome reveals proteins with host cell reprogramming potential
S Bellafiore, Z Shen, MN Rosso, P Abad, P Shih, SP Briggs
PLoS Pathog 4 (10), e1000192, 2008
2452008
Standards for plant synthetic biology: a common syntax for exchange of DNA parts
NJ Patron, D Orzaez, S Marillonnet, H Warzecha, C Matthewman, ...
New Phytologist 208 (1), 13-19, 2015
1742015
Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust
L Rajeev, UN Da Rocha, N Klitgord, EG Luning, J Fortney, SD Axen, ...
The ISME journal 7 (11), 2178-2191, 2013
1582013
Crown group Oxyphotobacteria postdate the rise of oxygen
PM Shih, J Hemp, LM Ward, NJ Matzke, WW Fischer
Geobiology 15 (1), 19-29, 2017
1102017
Primary endosymbiosis events date to the later Proterozoic with cross-calibrated phylogenetic dating of duplicated ATPase proteins
PM Shih, NJ Matzke
Proceedings of the National Academy of Sciences 110 (30), 12355-12360, 2013
1002013
Precise age of Bangiomorpha pubescens dates the origin of eukaryotic photosynthesis
TM Gibson, PM Shih, VM Cumming, WW Fischer, PW Crockford, ...
Geology 46 (2), 135-138, 2018
872018
Introduction of a synthetic CO2-fixing photorespiratory bypass into a cyanobacterium
PM Shih, J Zarzycki, KK Niyogi, CA Kerfeld
Journal of Biological Chemistry 289 (14), 9493-9500, 2014
802014
Biochemical characterization of predicted Precambrian RuBisCO
PM Shih, A Occhialini, JC Cameron, PJ Andralojc, MAJ Parry, CA Kerfeld
Nature Communications 7 (1), 1-11, 2016
682016
Evolution of phototrophy in the Chloroflexi phylum driven by horizontal gene transfer
LM Ward, J Hemp, PM Shih, SE McGlynn, WW Fischer
Frontiers in microbiology 9, 260, 2018
632018
Evolution of the 3-hydroxypropionate bicycle and recent transfer of anoxygenic photosynthesis into the Chloroflexi
PM Shih, LM Ward, WW Fischer
Proceedings of the National Academy of Sciences 114 (40), 10749-10754, 2017
472017
Bacterial diversification through geological time
S Louca, PM Shih, MW Pennell, WW Fischer, LW Parfrey, M Doebeli
Nature ecology & evolution 2 (9), 1458-1467, 2018
412018
A robust gene-stacking method utilizing yeast assembly for plant synthetic biology
PM Shih, K Vuu, N Mansoori, L Ayad, KB Louie, BP Bowen, TR Northen, ...
Nature communications 7 (1), 1-8, 2016
382016
Biotechnology and synthetic biology approaches for metabolic engineering of bioenergy crops
PM Shih, Y Liang, D Loqué
The Plant Journal 87 (1), 103-117, 2016
362016
Excited-state properties of the 16 kDa red carotenoid protein from Arthrospira maxima
P Chábera, M Durchan, PM Shih, CA Kerfeld, T Polívka
Biochimica et Biophysica Acta (BBA)-Bioenergetics 1807 (1), 30-35, 2011
362011
Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria
PBM Carnevali, F Schulz, CJ Castelle, RS Kantor, PM Shih, I Sharon, ...
Nature communications 10 (1), 1-15, 2019
242019
Photosynthesis and early Earth
PM Shih
Current Biology 25 (19), R855-R859, 2015
222015
MetaPOAP: presence or absence of metabolic pathways in metagenome-assembled genomes
LM Ward, PM Shih, WW Fischer
Bioinformatics 34 (24), 4284-4286, 2018
212018
Cyanobacterial evolution: fresh insight into ancient questions
PM Shih
Current Biology 25 (5), R192-R193, 2015
212015
Arabidopsis thaliana PGR7 encodes a conserved chloroplast protein that is necessary for efficient photosynthetic electron transport
HS Jung, Y Okegawa, PM Shih, E Kellogg, SE Abdel-Ghany, M Pilon, ...
PLoS One 5 (7), e11688, 2010
192010
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Articles 1–20