| Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, TN Yamaguchi, ... Nature methods 12 (7), 623-630, 2015 | 317 | 2015 |
| Crowdsourced estimation of cognitive decline and resilience in Alzheimer's disease GI Allen, N Amoroso, C Anghel, V Balagurusamy, CJ Bare, D Beaton, ... Alzheimer's & Dementia 12 (6), 645-653, 2016 | 88 | 2016 |
| Combining accurate tumor genome simulation with crowdsourcing to benchmark somatic structural variant detection AY Lee, AD Ewing, K Ellrott, Y Hu, KE Houlahan, JC Bare, SMG Espiritu, ... Genome biology 19, 1-15, 2018 | 47 | 2018 |
| A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery A Creason, D Haan, K Dang, KE Chiotti, M Inkman, A Lamb, T Yu, Y Hu, ... Cell systems 12 (8), 827-838. e5, 2021 | 20 | 2021 |
| Challenge participants, Kellen MR, Norman TC, Haussler D, Friend SH, Stolovitzky G, Margolin AA, Stuart JM, Boutros PC. Combining tumor genome simulation with crowdsourcing to … AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, TN Yamaguchi, ... Nat Methods 12 (7), 623-30, 2015 | 15 | 2015 |
| ICGC-TCGA DREAM Somatic Mutation Calling Challenge participants AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, TN Yamaguchi, ... Kellen, MR, Norman, TC, Haussler, D., Friend, SH, Stolovitzky, G., Margolin …, 2015 | 10 | 2015 |
| SeqControl: process control for DNA sequencing LC Chong, MA Albuquerque, NJ Harding, C Caloian, M Chan-Seng-Yue, ... Nature methods 11 (10), 1071-1075, 2014 | 9 | 2014 |
| Germline contamination and leakage in whole genome somatic single nucleotide variant detection DH Sendorek, C Caloian, K Ellrott, JC Bare, TN Yamaguchi, AD Ewing, ... BMC bioinformatics 19, 1-9, 2018 | 7 | 2018 |
| Valection: design optimization for validation and verification studies CI Cooper, D Yao, DH Sendorek, TN Yamaguchi, C P’ng, KE Houlahan, ... BMC bioinformatics 19, 1-11, 2018 | 4 | 2018 |
| Combining accurate tumour genome simulation with crowd-sourcing to benchmark somatic single nucleotide variant detection AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, A Margolin, JM Stuart, ... | | |
