An optimized optogenetic clustering tool for probing protein interaction and function A Taslimi, JD Vrana, D Chen, S Borinskaya, BJ Mayer, MJ Kennedy, ... Nature communications 5 (1), 4925, 2014 | 367 | 2014 |
Digital logic circuits in yeast with CRISPR-dCas9 NOR gates MW Gander, JD Vrana, WE Voje, JM Carothers, E Klavins Nature communications 8, 15459, 2017 | 207 | 2017 |
Optogenetic control of cell function using engineered photoreceptors GP Pathak, JD Vrana, CL Tucker Biology of the Cell 105 (2), 59-72, 2013 | 135 | 2013 |
Benchmarking of optical dimerizer systems GP Pathak, D Strickland, JD Vrana, CL Tucker ACS synthetic biology 3 (11), 832-838, 2014 | 114 | 2014 |
Light-dependent, Dark-promoted Interaction between Arabidopsis Cryptochrome 1 and Phytochrome B Proteins*♦ RM Hughes, JD Vrana, J Song, CL Tucker Journal of Biological Chemistry 287 (26), 22165-22172, 2012 | 44 | 2012 |
OLA-Simple: A software-guided HIV-1 drug resistance test for low-resource laboratories N Panpradist, IA Beck, J Vrana, N Higa, D McIntyre, PS Ruth, I So, ... EBioMedicine 50, 34-44, 2019 | 29 | 2019 |
Simpler and faster Covid-19 testing: Strategies to streamline SARS-CoV-2 molecular assays N Panpradist, Q Wang, PS Ruth, JH Kotnik, AK Oreskovic, A Miller, ... EBioMedicine 64, 2021 | 27 | 2021 |
Rapid profiling of disease alleles using a tunable reporter of protein misfolding AMC Pittman, MD Lage, V Poltoratsky, JD Vrana, A Paiardini, A Roncador, ... Genetics 192 (3), 831-842, 2012 | 26 | 2012 |
Tools for controlling protein interactions using light CL Tucker, JD Vrana, MJ Kennedy Current Protocols in Cell Biology 64 (1), 17.16. 1-17.16. 20, 2014 | 25 | 2014 |
Aquarium: open-source laboratory software for design, execution and data management J Vrana, O de Lange, Y Yang, G Newman, A Saleem, A Miller, C Cordray, ... Synthetic Biology 6 (1), ysab006, 2021 | 22 | 2021 |
Aquarium: the laboratory operating system (Version v2. 5.0) B Keller, J Vrana, A Miller, G Newman, E Klavins Zenodo, 2019 | 19 | 2019 |
Peripheral nervous system defects in a mouse model for peroxisomal biogenesis disorders MG Hanson, VL Fregoso, JD Vrana, CL Tucker, LA Niswander Developmental biology 395 (1), 84-95, 2014 | 19 | 2014 |
Robustness and reproducibility of simple and complex synthetic logic circuit designs using a DBTL loop B Cummins, J Vrana, RC Moseley, H Eramian, A Deckard, ... Synthetic Biology 8 (1), ysad005, 2023 | 6 | 2023 |
Implementation of an interactive mobile application to pilot a rapid assay to detect HIV drug resistance mutations in Kenya JD Vrana, N Panpradist, N Higa, D Ko, P Ruth, R Kanthula, JJ Lai, Y Yang, ... PLOS Global Public Health 2 (2), e0000185, 2022 | 4 | 2022 |
Highly-automated, high-throughput replication of yeast-based logic circuit design assessments RP Goldman, R Moseley, N Roehner, B Cummins, JD Vrana, KJ Clowers, ... Synthetic Biology 7 (1), ysac018, 2022 | 4 | 2022 |
Robust digital logic circuits in eukaryotic cells with CRISPR/dCas9 NOR gates MW Gander, JD Vrana, WE Voje Jr, JM Carothers, E Kalvins bioRxiv, 041871, 2016 | 4 | 2016 |
Computational prediction of synthetic circuit function across growth conditions B Cummins, RC Moseley, A Deckard, M Weston, G Zheng, D Bryce, ... bioRxiv, 2022.06. 13.495701, 2022 | 2 | 2022 |
Software systems for automated manufacturing of engineered organisms J Vrana University of Washington, 2021 | 1 | 2021 |
Optical control of protein-protein interactions to modulate cellular function A Taslimi, G Pathak, JD Vrana, CL Tucker CLEO: 2013, 1-2, 2013 | 1 | 2013 |
Implementation of an interactive mobile application to pilot a rapid assay to detect HIV drug resistance mutations in Kenya. PLOS Glob Public Health 2 (2): e0000185 JD Vrana, N Panpradist, N Higa, D Ko, P Ruth, R Kanthula | | 2022 |