Oliver Pybus

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Andrew RambautProfessor of Molecular Evolution, University of EdinburghVerified email at ed.ac.uk
Nuno Rodrigues FariaAssociate Professor, Imperial College and University of OxfordVerified email at ic.ac.uk
Edward C HolmesUniversity of SydneyVerified email at sydney.edu.au
Philippe LemeyAssociate Professor, KU LeuvenVerified email at kuleuven.be
Moritz U G KraemerUniversity of OxfordVerified email at zoo.ox.ac.uk
Jayna RaghwaniUniversity of OxfordVerified email at zoo.ox.ac.uk
paul klenermanUniversity of OxfordVerified email at ndm.ox.ac.uk
Alexei J. DrummondProfessor of Computational Biology, University of AucklandVerified email at cs.auckland.ac.nz
Marc A. SuchardProfessor, University of California, Los AngelesVerified email at ucla.edu
Eleanor BarnesOxford UniversityVerified email at ndm.ox.ac.uk
Tommy Tsan-Yuk LamThe University of Hong KongVerified email at hku.hk
Aris KatzourakisProfessor of Evolution and Genomics, University of OxfordVerified email at zoo.ox.ac.uk
Paul KellamImperial College London & Kymab LtdVerified email at imperial.ac.uk
Ester Cerdeira SabinoUniversidade de Sao PauloVerified email at usp.br
José LourençoDepartmental Lecturer @ Department of Zoology, University of Oxford.Verified email at zoo.ox.ac.uk
Julien ThézéINRAE, Université Clermont AuvergneVerified email at inrae.fr
Professor Andrew J TatemWorldPop, University of Southampton, UKVerified email at soton.ac.uk
Sarah C HillResearch Fellow, Royal Veterinary College, UKVerified email at rvc.ac.uk
Simon DellicourUniversity of Bruxelles (ULB), University of Leuven (KU Leuven)Verified email at ulb.ac.be
Professor Ian BrownHead of Virology, APHAVerified email at apha.gov.uk

Oliver Pybus

University of Oxford / Royal Veterinary College

Verified email at zoo.ox.ac.uk - Homepage

Evolution Epidemiology Virology Genomics Phylodynamics


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Bayesian coalescent inference of past population dynamics from molecular sequences AJ Drummond, A Rambaut, B Shapiro, OG Pybus Molecular Biology and Evolution 22 (5), 1185-1192, 2005	2862	2005
Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic GJD Smith, D Vijaykrishna, J Bahl, SJ Lycett, M Worobey, OG Pybus, ... Nature 459 (7250), 1122-1125, 2009	2389	2009
Pandemic potential of a strain of influenza A (H1N1): early findings C Fraser, CA Donnelly, S Cauchemez, WP Hanage, MD Van Kerkhove, ... Science 324 (5934), 1557-1561, 2009	2311	2009
Global distribution and prevalence of hepatitis C virus genotypes JP Messina, I Humphreys, A Flaxman, A Brown, GS Cooke, OG Pybus, ... Hepatology 61 (1), 77-87, 2015	1741	2015
The effect of human mobility and control measures on the COVID-19 epidemic in China MUG Kraemer, CH Yang, B Gutierrez, CH Wu, B Klein, DM Pigott, ... Science 368 (6490), 493-497, 2020	1628	2020
Unifying the epidemiological and evolutionary dynamics of pathogens BT Grenfell, OG Pybus, JR Gog, JLN Wood, JM Daly, JA Mumford, ... Science 303 (5656), 327-332, 2004	1277	2004
An investigation of transmission control measures during the first 50 days of the COVID-19 epidemic in China H Tian, Y Liu, Y Li, CH Wu, B Chen, MUG Kraemer, B Li, J Cai, B Xu, ... Science 368 (6491), 638-642, 2020	1216	2020
A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology A Rambaut, EC Holmes, Á O’Toole, V Hill, JT McCrone, C Ruis, ... Nature Microbiology 5 (11), 1403-1407, 2020	1006	2020
Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen) A Rambaut, TT Lam, L Max Carvalho, OG Pybus Virus Evolution 2 (1), vew007, 2016	992	2016
The genomic and epidemiological dynamics of human influenza A virus A Rambaut, OG Pybus, MI Nelson, C Viboud, JK Taubenberger, ... Nature 453 (7195), 615-619, 2008	984	2008
Zika virus in the Americas: early epidemiological and genetic findings NR Faria, RS da Silva Azevedo, MUG Kraemer, R Souza, MS Cunha, ... Science 352 (6283), 345-349, 2016	970	2016
Testing macro–evolutionary models using incomplete molecular phylogenies OG Pybus, PH Harvey Proceedings of the Royal Society B: Biological Sciences 267 (1459), 2267-2272, 2000	794	2000
Rise and fall of the Beringian steppe bison B Shapiro, AJ Drummond, A Rambaut, MC Wilson, PE Matheus, AV Sher, ... Science 306 (5701), 1561-1565, 2004	731	2004
The early spread and epidemic ignition of HIV-1 in human populations NR Faria, A Rambaut, MA Suchard, G Baele, T Bedford, MJ Ward, ... Science 346 (6205), 56-61, 2014	713	2014
Rates of molecular evolution in RNA viruses: a quantitative phylogenetic analysis GM Jenkins, A Rambaut, OG Pybus, EC Holmes Journal of Molecular Evolution 54 (2), 156-165, 2002	685	2002
Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples J Quick, ND Grubaugh, ST Pullan, IM Claro, AD Smith, K Gangavarapu, ... Nature Protocols 12 (6), 1261, 2017	571	2017
Tracing the origin and history of the HIV-2 epidemic P Lemey, OG Pybus, B Wang, NK Saksena, M Salemi, AM Vandamme Proceedings of the National Academy of Sciences 100 (11), 6588-6592, 2003	554	2003
Evolutionary analysis of the dynamics of viral infectious disease OG Pybus, A Rambaut Nature Reviews Genetics 10 (8), 540-550, 2009	537	2009
Recent epidemic of acute hepatitis C virus in HIV-positive men who have sex with men linked to high-risk sexual behaviours M Danta, D Brown, S Bhagani, OG Pybus, CA Sabin, M Nelson, M Fisher, ... AIDS 21 (8), 983-991, 2007	536	2007
Adaptation of HIV-1 to human leukocyte antigen class I Y Kawashima, K Pfafferott, J Frater, P Matthews, R Payne, M Addo, ... Nature 458 (7238), 641-645, 2009	519	2009

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