Brian G. Pierce

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Zhiping WengDirector, Professor of Program in Bioinformatics and Integrative Biology, University ofVerified email at umassmed.edu
Howook HwangSenior Scientist, Schrodinger & Computational Scientist, Columbia UniversityVerified email at columbia.edu
Thom VrevenVisterra, Inc.Verified email at visterrainc.com
Julian MintserisHarvard Medical SchoolVerified email at hms.harvard.edu
Brian M. BakerDepartment of Chemistry & Biochemistry, University of Notre DameVerified email at nd.edu
Roy MariuzzaVerified email at ibbr.umd.edu
Sowmya IyerSenior Scientist Computational Biology, Verve TherapeuticsVerified email at bu.edu
Xianjun Dong, PhDAssistant Professor, Harvard Medical School; Director of Genomics and Bioinformatics Hub, BWHVerified email at rics.bwh.harvard.edu
Ewan BirneyDirector, EMBL-EBIVerified email at ebi.ac.uk
Jiali ZhuangUniversity of Massachusetts Medical SchoolVerified email at umassmed.edu
Ragul GowthamanVerified email at umd.edu
Thomas FuerstUniversity of MarylandVerified email at umd.edu
Rong ChenDirector of Clinical Genome Informatics & Assistant Professor, Mount Sinai School of MedicineVerified email at mssm.edu
Bong-Hyun KimNational Cancer InstituteVerified email at nih.gov
Jie WangAssistant Professor of Oncology, Roswell Park Comprehensive Cancer CenterVerified email at roswellpark.org
Joel JaninUniversité Paris-SudVerified email at u-psud.fr
William Stafford NobleProfessor of Genome Sciences, University of WashingtonVerified email at uw.edu
Troy W. WhitfieldAssistant Professor, University of Massachusetts Medical SchoolVerified email at umassmed.edu
Oliver RandoProfessor of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical SchoolVerified email at umassmed.edu
Richard M. MyersHudsonAlpha Institute for BiotechnologyVerified email at hudsonalpha.com

Brian G. Pierce

Assistant Professor, Department of Cell Biology and Molecular Genetics, IBBR, University of Maryland

Verified email at umd.edu - Homepage

Protein Design Vaccine Design Protein Docking Structural Bioinformatics Immune Recognition


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ZDOCK server: interactive docking prediction of protein–protein complexes and symmetric multimers BG Pierce, K Wiehe, H Hwang, BH Kim, T Vreven, Z Weng Bioinformatics 30 (12), 1771-1773, 2014	889	2014
Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors J Wang, J Zhuang, S Iyer, XY Lin, TW Whitfield, MC Greven, BG Pierce, ... Genome research 22 (9), 1798-1812, 2012	877	2012
ZRANK: reranking protein docking predictions with an optimized energy function B Pierce, Z Weng PROTEINS: Structure, Function, and Bioinformatics 67 (4), 1078-1086, 2007	429	2007
Accelerating Protein Docking in ZDOCK Using an Advanced 3D Convolution Library BG Pierce, Y Hourai, Z Weng PloS one 6 (9), e24657, 2011	414	2011
Factorbook. org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium J Wang, J Zhuang, S Iyer, XY Lin, MC Greven, BH Kim, J Moore, ... Nucleic acids research 41 (D1), D171-D176, 2012	353	2012
Protein–protein docking benchmark 2.0: an update J Mintseris, K Wiehe, B Pierce, R Anderson, R Chen, J Janin, Z Weng Proteins: Structure, Function, and Bioinformatics 60 (2), 214-216, 2005	339	2005
Integrating statistical pair potentials into protein complex prediction J Mintseris, B Pierce, K Wiehe, R Anderson, R Chen, Z Weng Proteins: Structure, Function, and Bioinformatics 69 (3), 511-520, 2007	299	2007
Protein–protein docking benchmark version 3.0 H Hwang, B Pierce, J Mintseris, J Janin, Z Weng Proteins: Structure, Function, and Bioinformatics 73 (3), 705-709, 2008	272	2008
Updates to the integrated protein–protein interaction benchmarks: docking benchmark version 5 and affinity benchmark version 2 T Vreven, IH Moal, A Vangone, BG Pierce, PL Kastritis, M Torchala, ... Journal of molecular biology 427 (19), 3031-3041, 2015	215	2015
M-ZDOCK: a grid-based approach for Cn symmetric multimer docking B Pierce, W Tong, Z Weng Bioinformatics 21 (8), 1472-1478, 2005	177	2005
Community-wide assessment of protein-interface modeling suggests improvements to design methodology SJ Fleishman, TA Whitehead, EM Strauch, JE Corn, S Qin, HX Zhou, ... Journal of molecular biology 414 (2), 289-302, 2011	136	2011
A combination of rescoring and refinement significantly improves protein docking performance B Pierce, Z Weng Proteins: Structure, Function, and Bioinformatics 72 (1), 270-279, 2008	132	2008
ZDOCK and RDOCK performance in CAPRI rounds 3, 4, and 5 K Wiehe, B Pierce, J Mintseris, WW Tong, R Anderson, R Chen, Z Weng Proteins: Structure, Function, and Bioinformatics 60 (2), 207-213, 2005	122	2005
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ... Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016	114	2016
Community‐wide evaluation of methods for predicting the effect of mutations on protein–protein interactions R Moretti, SJ Fleishman, R Agius, M Torchala, PA Bates, PL Kastritis, ... Proteins: Structure, Function, and Bioinformatics 81 (11), 1980-1987, 2013	95	2013
Structure‐based design of a T‐cell receptor leads to nearly 100‐fold improvement in binding affinity for pepMHC JN Haidar, B Pierce, Y Yu, W Tong, M Li, Z Weng Proteins: Structure, Function, and Bioinformatics 74 (4), 948-960, 2009	85	2009
Performance of ZDOCK and ZRANK in CAPRI rounds 13–19 H Hwang, T Vreven, BG Pierce, JH Hung, Z Weng Proteins: Structure, Function, and Bioinformatics 78 (15), 3104-3110, 2010	82	2010
The performance of ZDOCK and ZRANK in rounds 6–11 of CAPRI K Wiehe, B Pierce, WW Tong, H Hwang, J Mintseris, Z Weng Proteins: Structure, Function, and Bioinformatics 69 (4), 719-725, 2007	75	2007
Cutting edge: evidence for a dynamically driven T cell signaling mechanism WF Hawse, MM Champion, MV Joyce, LM Hellman, M Hossain, V Ryan, ... The Journal of Immunology 188 (12), 5819-5823, 2012	73	2012
Prediction of protein–protein binding free energies T Vreven, H Hwang, BG Pierce, Z Weng Protein Science 21 (3), 396-404, 2012	72	2012

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