Annalisa Marsico
TitleCited byYear
PROmiRNA: a new miRNA promoter recognition method uncovers the complex regulation of intronic miRNAs
A Marsico, MR Huska, J Lasserre, H Hu, D Vucicevic, A Musahl, UA Orom, ...
Genome biology 14 (8), R84, 2013
822013
Microprocessor activity controls differential miRNA biogenesis in vivo
T Conrad, A Marsico, M Gehre, UA ěrom
Cell reports 9 (2), 542-554, 2014
482014
Microprocessor activity controls differential miRNA biogenesis in vivo
T Conrad, A Marsico, M Gehre, UA ěrom
Cell reports 9 (2), 542-554, 2014
482014
A novel pattern recognition algorithm to classify membrane protein unfolding pathways with high-throughput single-molecule force spectroscopy
A Marsico, D Labudde, T Sapra, DJ Muller, M Schroeder
Bioinformatics 23 (2), e231-e236, 2007
402007
A long non-coding RNA links calreticulin-mediated immunogenic cell removal to RB1 transcription
AS Musahl, X Huang, S Rusakiewicz, E Ntini, A Marsico, G Kroemer, ...
Oncogene 34 (39), 5046, 2015
302015
MeMotif: a database of linear motifs in α-helical transmembrane proteins
A Marsico, K Scheubert, A Tuukkanen, A Henschel, C Winter, ...
Nucleic acids research 38 (suppl_1), D181-D189, 2009
202009
ssHMM: extracting intuitive sequence-structure motifs from high-throughput RNA-binding protein data
D Heller, R Krestel, U Ohler, M Vingron, A Marsico
Nucleic acids research 45 (19), 11004-11018, 2017
182017
Structural fragment clustering reveals novel structural and functional motifs in α-helical transmembrane proteins
A Marsico, A Henschel, C Winter, A Tuukkanen, B Vassilev, K Scheubert, ...
BMC bioinformatics 11 (1), 204, 2010
132010
Structural fragment clustering reveals novel structural and functional motifs in α-helical transmembrane proteins
A Marsico, A Henschel, C Winter, A Tuukkanen, B Vassilev, K Scheubert, ...
BMC bioinformatics 11 (1), 204, 2010
132010
pysster: classification of biological sequences by learning sequence and structure motifs with convolutional neural networks
S Budach, A Marsico
Bioinformatics 34 (17), 3035-3037, 2018
122018
Understanding of SMFS barriers by means of energy profiles
F Dressel, A Marsico, A Tuukkanen, M Schroeder, D Labudde
German conference on bioinformatics–GCB 2007, 2007
102007
PureCLIP: capturing target-specific protein–RNA interaction footprints from single-nucleotide CLIP-seq data
S Krakau, H Richard, A Marsico
Genome biology 18 (1), 240, 2017
92017
Zebrafish Expression Ontology of Gene Sets (ZEOGS): a tool to analyze enrichment of zebrafish anatomical terms in large gene sets
SV Prykhozhij, A Marsico, SH Meijsing
Zebrafish 10 (3), 303-315, 2013
92013
Long ncRNA A-ROD activates its target gene DKK1 at its release from chromatin
E Ntini, A Louloupi, J Liz, JM Muino, A Marsico, UAV ěrom
Nature communications 9 (1), 1636, 2018
72018
Principles of microRNA regulation revealed through modeling microrna expression quantitative trait loci
S Budach, M Heinig, A Marsico
Genetics 203 (4), 1629-1640, 2016
52016
Genome-wide Chromatin Profiling of Legionella pneumophila–Infected Human Macrophages Reveals Activation of the Probacterial Host Factor TNFAIP2
I Du Bois, A Marsico, W Bertrams, MR Schweiger, BE Caffrey, ...
The Journal of infectious diseases 214 (3), 454-463, 2016
42016
Kinetics of Xist-induced gene silencing can be predicted from combinations of epigenetic and genomic features
LBA e Sousa, I Jonkers, L Syx, I Dunkel, J Chaumeil, C Picard, B Foret, ...
Genome research, gr. 245027.118, 2019
32019
Differentially expressed miRNAs after Legionella pneumophila infection of human macrophages
C Herkt, A Marsico, W Bertrams, W Chen, M Vingron, B Schmeck, A Sittka
European Respiratory Journal 44 (Suppl 58), P4943, 2014
32014
Identifying lncRNA-mediated regulatory modules via ChIA-PET network analysis
D Thiel, ND Conrad, E Ntini, RX Peschutter, H Siebert, A Marsico
BMC bioinformatics 20 (1), 292, 2019
22019
TriPepSVM: de novo prediction of RNA-binding proteins based on short amino acid motifs
A Bressin, R Schulte-Sasse, D Figini, EC Urdaneta, BM Beckmann, ...
Nucleic acids research 47 (9), 4406-4417, 2019
22019
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Articles 1–20