| Toward understanding cancer stem cell heterogeneity in the tumor microenvironment F Bocci, L Gearhart-Serna, M Boareto, M Ribeiro, E Ben-Jacob, GR Devi, ... Proceedings of the National Academy of Sciences 116 (1), 148-157, 2019 | 256 | 2019 |
| NRF2 activates a partial epithelial-mesenchymal transition and is maximally present in a hybrid epithelial/mesenchymal phenotype F Bocci, SC Tripathi, SA Vilchez Mercedes, JT George, JP Casabar, ... Integrative Biology 11 (6), 251-263, 2019 | 112 | 2019 |
| Numb prevents a complete epithelial–mesenchymal transition by modulating Notch signalling F Bocci, MK Jolly, SC Tripathi, M Aguilar, SM Hanash, H Levine, ... Journal of the Royal Society Interface 14 (136), 20170512, 2017 | 108 | 2017 |
| Decoding leader cells in collective cancer invasion SA Vilchez Mercedes, F Bocci, H Levine, JN Onuchic, MK Jolly, PK Wong Nature Reviews Cancer 21 (9), 592-604, 2021 | 94 | 2021 |
| Understanding the principles of pattern formation driven by notch signaling by integrating experiments and theoretical models F Bocci, JN Onuchic, MK Jolly Frontiers in Physiology 11, 560331, 2020 | 74 | 2020 |
| Quantifying cancer epithelial-mesenchymal plasticity and its association with stemness and immune response D Jia, X Li, F Bocci, S Tripathi, Y Deng, MK Jolly, JN Onuchic, H Levine Journal of clinical medicine 8 (5), 725, 2019 | 68 | 2019 |
| A mechanism-based computational model to capture the interconnections among epithelial-mesenchymal transition, cancer stem cells and Notch-Jagged signaling F Bocci, MK Jolly, J George, H Levine, JN Onuchic Oncotarget 9 (52), 29906-29920, 2018 | 67 | 2018 |
| Pericytes enable effective angiogenesis in the presence of proinflammatory signals TY Kang, F Bocci, MK Jolly, H Levine, JN Onuchic, A Levchenko Proceedings of the National Academy of Sciences 116 (47), 23551-23561, 2019 | 58 | 2019 |
| A biophysical model uncovers the size distribution of migrating cell clusters across cancer types F Bocci, M Kumar Jolly, JN Onuchic Cancer research 79 (21), 5527-5535, 2019 | 50 | 2019 |
| PAGE4 and Conformational Switching: Insights from Molecular Dynamics Simulations and Implications for Prostate Cancer X Lin, S Roy, MK Jolly, F Bocci, N Schafer, MY Tsai, P Kulkarni, Y Chen, ... Journal of Molecular Biology 430, 2422-2438, 2018 | 38 | 2018 |
| Deciphering the dynamics of epithelial-mesenchymal transition and cancer stem cells in tumor progression F Bocci, H Levine, JN Onuchic, MK Jolly Current Stem Cell Reports, 1-11, 2019 | 34 | 2019 |
| Nrf2 modulates the hybrid epithelial/mesenchymal phenotype and notch signaling during collective cancer migration SA Vilchez Mercedes, F Bocci, M Ahmed, I Eder, N Zhu, H Levine, ... Frontiers in Molecular Biosciences 9, 807324, 2022 | 26* | 2022 |
| Role of metabolic spatiotemporal dynamics in regulating biofilm colony expansion F Bocci, Y Suzuki, M Lu, JN Onuchic Proceedings of the National Academy of Sciences 115 (16), 4288-4293, 2018 | 26 | 2018 |
| Structural and dynamical order of a disordered protein: molecular insights into conformational switching of PAGE4 at the systems level X Lin, P Kulkarni, F Bocci, NP Schafer, S Roy, MY Tsai, Y He, Y Chen, ... Biomolecules 9 (2), 77, 2019 | 22 | 2019 |
| Inference of intercellular communications and multilayer gene-regulations of epithelial–mesenchymal transition from single-cell transcriptomic data Y Sha, S Wang, F Bocci, P Zhou, Q Nie Frontiers in Genetics 11, 604585, 2021 | 19 | 2021 |
| spliceJAC: transition genes and state‐specific gene regulation from single‐cell transcriptome data F Bocci, P Zhou, Q Nie Molecular systems biology 18 (11), e11176, 2022 | 18 | 2022 |
| Differential cell composition and split epidermal differentiation in human palm, sole, and hip skin J Wiedemann, AC Billi, F Bocci, G Kashgari, E Xing, LC Tsoi, L Meller, ... Cell reports 42 (1), 2023 | 13 | 2023 |
| Investigating epithelial‐mesenchymal heterogeneity of tumors and circulating tumor cells with transcriptomic analysis and biophysical modeling F Bocci, S Mandal, T Tejaswi, MK Jolly Computational and Systems Oncology 1 (2), e1015, 2021 | 13 | 2021 |
| Single-cell RNA-seq analysis reveals the acquisition of cancer stem cell traits and increase of cell–cell signaling during EMT progression F Bocci, P Zhou, Q Nie Cancers 13 (22), 5726, 2021 | 12 | 2021 |
| Stochastic fluctuations promote ordered pattern formation of cells in the Notch-Delta signaling pathway M Galbraith, F Bocci, JN Onuchic PLOS Computational Biology 18 (7), e1010306, 2022 | 7 | 2022 |
Jose OnuchicCTBP Rice UniversityVerified email at rice.edu
