Department of Computer Science and Engineering, Shanghai Jiao Tong University
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The HP1 homolog rhino anchors a nuclear complex that suppresses piRNA precursor splicing
Z Zhang, J Wang, N Schultz, F Zhang, SS Parhad, S Tu, T Vreven, ...
Cell 157 (6), 1353-1363, 2014
The piRNA targeting rules and the resistance to piRNA silencing in endogenous genes
D Zhang, S Tu, M Stubna, WS Wu, WC Huang, Z Weng, HC Lee
Science 359 (6375), 587-592, 2018
Identification of piRNA binding sites reveals the argonaute regulatory landscape of the C. elegans germline
EZ Shen, H Chen, AR Ozturk, S Tu, M Shirayama, W Tang, YH Ding, ...
Cell 172 (5), 937-951. e18, 2018
The RNase PARN-1 Trims piRNA 3′ Ends to Promote Transcriptome Surveillance in C. elegans
W Tang, S Tu, HC Lee, Z Weng, CC Mello
Cell 164 (5), 974-984, 2016
Accurate prediction of transposon-derived piRNAs by integrating various sequential and physicochemical features
L Luo, D Li, W Zhang, S Tu, X Zhu, G Tian
PloS one 11 (4), e0153268, 2016
Drug side effect prediction through linear neighborhoods and multiple data source integration
W Zhang, Y Chen, S Tu, F Liu, Q Qu
2016 IEEE international conference on bioinformatics and biomedicine (BIBM …, 2016
The coding regions of germline mRNAs confer sensitivity to argonaute regulation in C. elegans
M Seth, M Shirayama, W Tang, EZ Shen, S Tu, HC Lee, Z Weng, ...
Cell reports 22 (9), 2254-2264, 2018
A unified frame of predicting side effects of drugs by using linear neighborhood similarity
W Zhang, X Yue, F Liu, Y Chen, S Tu, X Zhang
BMC systems biology 11 (6), 23-34, 2017
Adaptive evolution leads to cross-species incompatibility in the piRNA transposon silencing machinery
SS Parhad, S Tu, Z Weng, WE Theurkauf
Developmental cell 43 (1), 60-70. e5, 2017
Sketch-pix2seq: a model to generate sketches of multiple categories
Y Chen, S Tu, Y Yi, L Xu
arXiv preprint arXiv:1709.04121, 2017
Comparative functional characterization of the CSR-1 22G-RNA pathway in Caenorhabditis nematodes
S Tu, MZ Wu, J Wang, AD Cutter, Z Weng, JM Claycomb
Nucleic acids research 43 (1), 208-224, 2015
A sex chromosome piRNA promotes robust dosage compensation and sex determination in C. elegans
W Tang, M Seth, S Tu, EZ Shen, Q Li, M Shirayama, Z Weng, CC Mello
Developmental cell 44 (6), 762-770. e3, 2018
A theoretical investigation of several model selection criteria for dimensionality reduction
S Tu, L Xu
Pattern Recognition Letters 33 (9), 1117-1126, 2012
Integrated analysis of transcriptome-wide m6A methylome of osteosarcoma stem cells enriched by chemotherapy
Y Wang, L Zeng, C Liang, R Zan, W Ji, Z Zhang, Y Wei, S Tu, Y Dong
Epigenomics 11 (15), 1693-1715, 2019
Learning Gaussian mixture with automatic model selection: A comparative study on three Bayesian related approaches
L Shi, S Tu, L Xu
Frontiers of Electrical and Electronic Engineering in China 6 (2), 215-244, 2011
piRTarBase: a database of piRNA targeting sites and their roles in gene regulation
WS Wu, JS Brown, TT Chen, YH Chu, WC Huang, S Tu, HC Lee
Nucleic acids research 47 (D1), D181-D187, 2019
pirScan: a webserver to predict piRNA targeting sites and to avoid transgene silencing in C. elegans
WS Wu, WC Huang, JS Brown, D Zhang, X Song, H Chen, S Tu, Z Weng, ...
Nucleic acids research 46 (W1), W43-W48, 2018
A binary matrix factorization algorithm for protein complex prediction
S Tu, L Xu, R Chen
2010 IEEE International Conference on Bioinformatics and Biomedicine …, 2010
Discriminative training of GMM-HMM acoustic model by RPCL learning
Z Pang, S Tu, D Su, X Wu, L Xu
Frontiers of Electrical and Electronic Engineering in China 6 (2), 283-290, 2011
Co-dependent assembly of Drosophila piRNA precursor complexes and piRNA cluster heterochromatin
G Zhang, S Tu, T Yu, XO Zhang, SS Parhad, Z Weng, WE Theurkauf
Cell reports 24 (13), 3413-3422. e4, 2018
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