Marinka Zitnik
Marinka Zitnik
Assistant Professor, Harvard University
Verified email at hms.harvard.edu - Homepage
Title
Cited by
Cited by
Year
Orange: data mining toolbox in Python
J Demšar, T Curk, A Erjavec, Č Gorup, T Hočevar, M Milutinovič, ...
the Journal of machine Learning research 14 (1), 2349-2353, 2013
8062013
Modeling polypharmacy side effects with graph convolutional networks
M Zitnik, M Agrawal, J Leskovec
Bioinformatics 34 (13), 457-466, 2018
1872018
Predicting multicellular function through multi-layer tissue networks
M Zitnik, J Leskovec
Bioinformatics 33 (14), 190-198, 2017
1542017
Data Fusion by Matrix Factorization
M Zitnik, B Zupan
Pattern Analysis and Machine Intelligence, IEEE Transactions on 37 (1), 41-53, 2015
139*2015
Learning Structural Node Embeddings via Diffusion Wavelets
C Donnat, M Zitnik, D Hallac, J Leskovec
Proceedings of the 24th ACM SIGKDD International Conference on Knowledge …, 2018
103*2018
Genome-wide localization study of yeast Pex11 identifies peroxisome–mitochondria interactions through the ERMES complex
MM Ušaj, M Brložnik, P Kaferle, M Žitnik, H Wolinski, F Leitner, ...
Journal of Molecular Biology 427 (11), 2072-2087, 2015
952015
Predicting human olfactory perception from chemical features of odor molecules
PM A. Keller, R.C. Gerkin, Y. Guan, A. Dhurandhar, G. Turu, B. Szalai, J.D ...
Science 355 (6327), 820-826, 2017
922017
Discovering disease-disease associations by fusing systems-level molecular data
M Žitnik, V Janjić, C Larminie, B Zupan, N Pržulj
Scientific Reports 3, 3202, 2013
822013
Machine learning for integrating data in biology and medicine: Principles, practice, and opportunities
M Zitnik, F Nguyen, B Wang, J Leskovec, A Goldenberg, MM Hoffman
Information Fusion 50, 71-91, 2019
802019
Cross-type biomedical named entity recognition with deep multi-task learning
X Wang, Y Zhang, X Ren, Y Zhang, M Zitnik, J Shang, C Langlotz, J Han
Bioinformatics 35 (10), 1745-1752, 2019
642019
Orthogonal matrix factorization enables integrative analysis of multiple RNA binding proteins
M Stražar, M Žitnik, B Zupan, J Ule, T Curk
Bioinformatics 32 (10), 1527-1535, 2016
602016
NIMFA : A Python Library for Nonnegative Matrix Factorization
M Zitnik, B Zupan
Journal of Machine Learning Research 13, 849-853, 2012
592012
Embedding Logical Queries on Knowledge Graphs
WL Hamilton, P Bajaj, M Zitnik, D Jurafsky, J Leskovec
arXiv preprint arXiv:1806.01445, 2018
542018
A comprehensive structural, biochemical and biological profiling of the human NUDIX hydrolase family
J Carreras-Puigvert, M Zitnik, AS Jemth, M Carter, JE Unterlass, ...
Nature Communications 8 (1), 1541, 2017
372017
Large-scale analysis of disease pathways in the human interactome
M Agrawal*, M Zitnik*, (*first co-author), J Leskovec
Pacific Symposium on Biocomputing 23, 111--122, 2018
332018
Matrix factorization-based data fusion for gene function prediction in baker's yeast and slime mold
M Žitnik, B Zupan
Pacific Symposium on Biocomputing 19, 400-411, 2014
312014
Gnnexplainer: Generating explanations for graph neural networks
Z Ying, D Bourgeois, J You, M Zitnik, J Leskovec
Advances in neural information processing systems, 9244-9255, 2019
262019
Network Enhancement as a general method to denoise weighted biological networks
B Wang*, A Pourshafeie*, M Zitnik*, (*first co-author), J Zhu, ...
Nature Communications 9, 3108, 2018
262018
Strategies for Pre-training Graph Neural Networks
W Hu, B Liu, J Gomes, M Zitnik, P Liang, V Pande, J Leskovec
arXiv preprint arXiv:1905.12265, 2019
242019
Gnn explainer: A tool for post-hoc explanation of graph neural networks
R Ying, D Bourgeois, J You, M Zitnik, J Leskovec
arXiv preprint arXiv:1903.03894, 2019
242019
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