Marinka Zitnik
Marinka Zitnik
Assistant Professor, Harvard University
Verified email at - Homepage
Cited by
Cited by
Orange: data mining toolbox in Python
J Demšar, T Curk, A Erjavec, Č Gorup, T Hočevar, M Milutinovič, ...
the Journal of machine Learning research 14 (1), 2349-2353, 2013
Modeling polypharmacy side effects with graph convolutional networks
M Zitnik, M Agrawal, J Leskovec
Bioinformatics 34 (13), 457-466, 2018
Predicting multicellular function through multi-layer tissue networks
M Zitnik, J Leskovec
Bioinformatics 33 (14), 190-198, 2017
Data Fusion by Matrix Factorization
M Zitnik, B Zupan
Pattern Analysis and Machine Intelligence, IEEE Transactions on 37 (1), 41-53, 2015
Learning Structural Node Embeddings via Diffusion Wavelets
C Donnat, M Zitnik, D Hallac, J Leskovec
Proceedings of the 24th ACM SIGKDD International Conference on Knowledge …, 2018
Genome-wide localization study of yeast Pex11 identifies peroxisome–mitochondria interactions through the ERMES complex
MM Ušaj, M Brložnik, P Kaferle, M Žitnik, H Wolinski, F Leitner, ...
Journal of Molecular Biology 427 (11), 2072-2087, 2015
Predicting human olfactory perception from chemical features of odor molecules
PM A. Keller, R.C. Gerkin, Y. Guan, A. Dhurandhar, G. Turu, B. Szalai, J.D ...
Science 355 (6327), 820-826, 2017
Discovering disease-disease associations by fusing systems-level molecular data
M Žitnik, V Janjić, C Larminie, B Zupan, N Pržulj
Scientific Reports 3, 3202, 2013
Machine learning for integrating data in biology and medicine: Principles, practice, and opportunities
M Zitnik, F Nguyen, B Wang, J Leskovec, A Goldenberg, MM Hoffman
Information Fusion 50, 71-91, 2019
Cross-type biomedical named entity recognition with deep multi-task learning
X Wang, Y Zhang, X Ren, Y Zhang, M Zitnik, J Shang, C Langlotz, J Han
Bioinformatics 35 (10), 1745-1752, 2019
Orthogonal matrix factorization enables integrative analysis of multiple RNA binding proteins
M Stražar, M Žitnik, B Zupan, J Ule, T Curk
Bioinformatics 32 (10), 1527-1535, 2016
NIMFA : A Python Library for Nonnegative Matrix Factorization
M Zitnik, B Zupan
Journal of Machine Learning Research 13, 849-853, 2012
Embedding Logical Queries on Knowledge Graphs
WL Hamilton, P Bajaj, M Zitnik, D Jurafsky, J Leskovec
arXiv preprint arXiv:1806.01445, 2018
A comprehensive structural, biochemical and biological profiling of the human NUDIX hydrolase family
J Carreras-Puigvert, M Zitnik, AS Jemth, M Carter, JE Unterlass, ...
Nature Communications 8 (1), 1541, 2017
Large-scale analysis of disease pathways in the human interactome
M Agrawal*, M Zitnik*, (*first co-author), J Leskovec
Pacific Symposium on Biocomputing 23, 111--122, 2018
Matrix factorization-based data fusion for gene function prediction in baker's yeast and slime mold
M Žitnik, B Zupan
Pacific Symposium on Biocomputing 19, 400-411, 2014
Gnnexplainer: Generating explanations for graph neural networks
Z Ying, D Bourgeois, J You, M Zitnik, J Leskovec
Advances in neural information processing systems, 9244-9255, 2019
Network Enhancement as a general method to denoise weighted biological networks
B Wang*, A Pourshafeie*, M Zitnik*, (*first co-author), J Zhu, ...
Nature Communications 9, 3108, 2018
Strategies for Pre-training Graph Neural Networks
W Hu, B Liu, J Gomes, M Zitnik, P Liang, V Pande, J Leskovec
arXiv preprint arXiv:1905.12265, 2019
Gnn explainer: A tool for post-hoc explanation of graph neural networks
R Ying, D Bourgeois, J You, M Zitnik, J Leskovec
arXiv preprint arXiv:1903.03894, 2019
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