Marinka Zitnik
Marinka Zitnik
Stanford University, Harvard University
Verified email at - Homepage
TitleCited byYear
Orange: data mining toolbox in Python
J Demšar, T Curk, A Erjavec, Č Gorup, T Hočevar, M Milutinovič, ...
The Journal of Machine Learning Research 14 (1), 2349-2353, 2013
Data Fusion by Matrix Factorization
M Zitnik, B Zupan
Pattern Analysis and Machine Intelligence, IEEE Transactions on 37 (1), 41-53, 2015
Predicting multicellular function through multi-layer tissue networks
M Zitnik, J Leskovec
Bioinformatics 33 (14), 190-198, 2017
Modeling polypharmacy side effects with graph convolutional networks
M Zitnik, M Agrawal, J Leskovec
Bioinformatics 34 (13), 457-466, 2018
Genome-wide localization study of yeast Pex11 identifies peroxisome–mitochondria interactions through the ERMES complex
MM Ušaj, M Brložnik, P Kaferle, M Žitnik, H Wolinski, F Leitner, ...
Journal of Molecular Biology 427 (11), 2072-2087, 2015
Discovering disease-disease associations by fusing systems-level molecular data
M Žitnik, V Janjić, C Larminie, B Zupan, N Pržulj
Scientific Reports 3, 3202, 2013
Predicting human olfactory perception from chemical features of odor molecules
PM A. Keller, R.C. Gerkin, Y. Guan, A. Dhurandhar, G. Turu, B. Szalai, J.D ...
Science 355 (6327), 820-826, 2017
Learning Structural Node Embeddings via Diffusion Wavelets
C Donnat, M Zitnik, D Hallac, J Leskovec
Proceedings of the 24th ACM SIGKDD International Conference on Knowledge …, 2018
Orthogonal matrix factorization enables integrative analysis of multiple RNA binding proteins
M Stražar, M Žitnik, B Zupan, J Ule, T Curk
Bioinformatics 32 (10), 1527-1535, 2016
NIMFA : A Python Library for Nonnegative Matrix Factorization
M Zitnik, B Zupan
Journal of Machine Learning Research 13, 849-853, 2012
Machine learning for integrating data in biology and medicine: Principles, practice, and opportunities
M Zitnik, F Nguyen, B Wang, J Leskovec, A Goldenberg, MM Hoffman
Information Fusion 50, 71-91, 2019
Cross-type biomedical named entity recognition with deep multi-task learning
X Wang, Y Zhang, X Ren, Y Zhang, M Zitnik, J Shang, C Langlotz, J Han
Bioinformatics 35 (10), 1745-1752, 2018
A comprehensive structural, biochemical and biological profiling of the human NUDIX hydrolase family
J Carreras-Puigvert, M Zitnik, AS Jemth, M Carter, JE Unterlass, ...
Nature Communications 8 (1), 1541, 2017
Matrix factorization-based data fusion for gene function prediction in baker's yeast and slime mold
M Žitnik, B Zupan
Pacific Symposium on Biocomputing 19, 400-411, 2014
Embedding Logical Queries on Knowledge Graphs
WL Hamilton, P Bajaj, M Zitnik, D Jurafsky, J Leskovec
arXiv preprint arXiv:1806.01445, 2018
Large-scale analysis of disease pathways in the human interactome
M Agrawal*, M Zitnik*, (*first co-author), J Leskovec
Pacific Symposium on Biocomputing 23, 111--122, 2018
Gene network inference by fusing data from diverse distributions
M Zitnik, B Zupan
Bioinformatics 31 (12), 230–239, 2015
Network Enhancement as a general method to denoise weighted biological networks
B Wang*, A Pourshafeie*, M Zitnik*, (*first co-author), J Zhu, ...
Nature Communications 9, 3108, 2018
Gene prioritization by compressive data fusion and chaining
M Žitnik, EA Nam, C Dinh, A Kuspa, G Shaulsky, B Zupan
PLoS computational biology 11 (10), e1004552, 2015
Jumping across biomedical contexts using compressive data fusion
M Zitnik, B Zupan
Bioinformatics 32 (12), 90-100, 2016
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