Joshua A. Mitchell
Joshua A. Mitchell
Open Molecular Software Foundation
Verified email at - Homepage
Cited by
Cited by
Monitoring hippocampal glycine with the computationally designed optical sensor GlyFS
WH Zhang, MK Herde, JA Mitchell, JH Whitfield, AB Wulff, V Vongsouthi, ...
Nature chemical biology 14 (9), 861-869, 2018
T-dependent B cell responses to Plasmodium induce antibodies that form a high-avidity multivalent complex with the circumsporozoite protein
CR Fisher, HJ Sutton, JA Kaczmarski, HA McNamara, B Clifton, J Mitchell, ...
PLoS pathogens 13 (7), e1006469, 2017
Structural and evolutionary approaches to the design and optimization of fluorescence-based small molecule biosensors
JA Kaczmarski, JA Mitchell, MA Spence, V Vongsouthi, CJ Jackson
Current Opinion in Structural Biology 57, 31-38, 2019
OpenMM 8: molecular dynamics simulation with machine learning potentials
P Eastman, R Galvelis, RP PelŠez, CRA Abreu, SE Farr, E Gallicchio, ...
The Journal of Physical Chemistry B 128 (1), 109-116, 2023
Open force field BespokeFit: automating bespoke torsion parametrization at scale
JT Horton, S Boothroyd, J Wagner, JA Mitchell, T Gokey, DL Dotson, ...
Journal of chemical information and modeling 62 (22), 5622-5633, 2022
A Rationally and Computationally Designed Fluorescent Biosensor for d-Serine
V Vongsouthi, JH Whitfield, P Unichenko, JA Mitchell, B Breithausen, ...
ACS sensors 6 (11), 4193-4205, 2021
Rangefinder: A semisynthetic FRET sensor design algorithm
JA Mitchell, JH Whitfield, WH Zhang, C Henneberger, H Janovjak, ...
Acs Sensors 1 (11), 1286-1290, 2016
Computational design and experimental characterisation of a stable human heparanase variant
C Whitefield, N Hong, JA Mitchell, CJ Jackson
RSC Chemical Biology 3 (3), 341-349, 2022
Development and benchmarking of an open, self-consistent force field for proteins and small molecules from the open force field initiative
CE Cavender, PK Behara, S Boothroyd, DL Dotson, JT Horton, JA Mitchell, ...
Biophysical Journal 122 (3), 421a, 2023
Method for developing optical sensors using a synthetic dye-fluorescent protein FRET pair and computational modeling and assessment
JA Mitchell, WH Zhang, MK Herde, C Henneberger, H Janovjak, ...
Synthetic Protein Switches: Methods and Protocols, 89-99, 2017
Capturing the Dynamics of a Spring-Loaded Protein
JA Mitchell, ML O’Mara
Structure 25 (7), 963-964, 2017
Molecular Dynamics for Synthetic Biology
JA Mitchell
PQDT-Global, 2020
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