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Bogdan Lev
Bogdan Lev
Research Fellow at Department of Physics, School of Science, RMIT
Verified email at rmit.edu.au
Title
Cited by
Cited by
Year
Ion selectivity in channels and transporters
B Roux, S Bernèche, B Egwolf, B Lev, SY Noskov, CN Rowley, H Yu
Journal of general physiology 137 (5), 415-426, 2011
1732011
Atomistic simulations of membrane ion channel conduction, gating, and modulation
E Flood, C Boiteux, B Lev, I Vorobyov, TW Allen
Chemical Reviews 119 (13), 7737-7832, 2019
992019
Evidence for a third sodium-binding site in glutamate transporters suggests an ion/substrate coupling model
HP Larsson, X Wang, B Lev, I Baconguis, DA Caplan, NP Vyleta, HP Koch, ...
Proceedings of the National Academy of Sciences 107 (31), 13912-13917, 2010
852010
String method solution of the gating pathways for a pentameric ligand-gated ion channel
B Lev, S Murail, F Poitevin, BA Cromer, M Baaden, M Delarue, TW Allen
Proceedings of the National Academy of Sciences 114 (21), E4158-E4167, 2017
652017
Relative free energies for hydration of monovalent ions from QM and QM/MM simulations
B Lev, B Roux, SY Noskov
Journal of Chemical Theory and Computation 9 (9), 4165-4175, 2013
562013
Cholesterol depletion inhibits Na+, K+-ATPase activity in a near-native membrane environment
A Garcia, B Lev, KR Hossain, A Gorman, THN Pham, F Cornelius, ...
Journal of Biological Chemistry 294 (15), 5956-5969, 2019
342019
Elucidating factors important for monovalent cation selectivity in enzymes: E. coli β-galactosidase as a model
RW Wheatley, DH Juers, BB Lev, RE Huber, SY Noskov
Physical Chemistry Chemical Physics 17 (16), 10899-10909, 2015
342015
A guide to QM/MM methodology and applications
R Zhang, B Lev, JE Cuervo, SY Noskov, DR Salahub
Adv. Quantum Chem 59, 353-400, 2010
322010
QM/MM calculations with deMon2k
DR Salahub, SY Noskov, B Lev, R Zhang, V Ngo, A Goursot, P Calaminici, ...
Molecules 20 (3), 4780-4812, 2015
282015
Identification of electric-field-dependent steps in the Na+, K+-pump cycle
LJ Mares, A Garcia, HH Rasmussen, F Cornelius, YA Mahmmoud, ...
Biophysical journal 107 (6), 1352-1363, 2014
262014
Atomistic models of ion and solute transport by the sodium-dependent secondary active transporters
I Zdravkovic, C Zhao, B Lev, JE Cuervo, SY Noskov
Biochimica et Biophysica Acta (BBA)-Biomembranes 1818 (2), 337-347, 2012
262012
The QM‐MM interface for CHARMM‐deMon
B Lev, R Zhang, A De la Lande, D Salahub, SY Noskov
Journal of computational chemistry 31 (5), 1015-1023, 2010
252010
The voltage-sensitive dye RH421 detects a Na+, K+-ATPase conformational change at the membrane surface
A Garcia, PR Pratap, C Luepfert, F Cornelius, D Jacquemin, B Lev, ...
Biochimica et Biophysica Acta (BBA)-Biomembranes 1859 (5), 813-823, 2017
182017
Role of protein matrix rigidity and local polarization effects in the monovalent cation selectivity of crystallographic sites in the Na-coupled aspartate transporter Glt Ph
B Lev, SY Noskov
Physical Chemistry Chemical Physics 15 (7), 2397-2404, 2013
92013
Simulating ion channel activation mechanisms using swarms of trajectories
B Lev, TW Allen
Journal of Computational Chemistry 41 (5), 387-401, 2020
62020
Na+, K+ and Tl+ hydration from QM/MM computations and MD simulations with a polarizable force field
BB Lev, DR Salahub, SY Noskov
Interdisciplinary Sciences: Computational Life Sciences 2, 12-20, 2010
62010
Halothane solvation in water and organic solvents from molecular simulations with new polarizable potential function
JO Subbotina, J Johannes, B Lev, SY Noskov
The Journal of Physical Chemistry B 114 (19), 6401-6408, 2010
52010
Involvement of the alpha-subunit N-terminus in the mechanism of the Na+, K+-ATPase
B Lev, M Chennath, CG Cranfield, F Cornelius, TW Allen, RJ Clarke
Biochimica et Biophysica Acta (BBA)-Molecular Cell Research, 119539, 2023
32023
Gating pathways for a pentameric ligand-gated ion channel solved by atomistic string method simulations
B Lev, S Murail, F Poitevin, BA Cromer, M Baaden, M Delarue, TW Allen
Biophysical Journal 112 (3), 475a, 2017
12017
Involvement of alpha-subunit N-termini in the mechanism and regulation of the Na+, K+-and H+, K+-ATPases
RJ Clarke, B Lev, M Chennath, TW Allen, CG Cranfield, EL Blayney, ...
Biophysical Journal 122 (3), 529a, 2023
2023
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