Jaap Heringa

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Anton FeenstraAssistant professor of Bioinformatics, IBIVU Centre for Integrative Bioinformatics, VU UniversityVerified email at vu.nl
Sanne AbelnAssociate ProfessorVerified email at vu.nl
Walter PirovanoInnovation manager, BaseClear B.V.Verified email at baseclear.nl
des higginsUniversity College DublinVerified email at ucd.ie
Cedric NotredamePrincipal Investigator, Centre For Genomic Regulation CRG, BarcelonaVerified email at crg.eu
Kuang LinNDPH, Oxford UniversityVerified email at ndph.ox.ac.uk
Nicola BonzanniVU University AmsterdamVerified email at vu.nl
Punto BawonoThe Centre for Integrative Bioinformatics VU (IBIVU)Verified email at vu.nl
Jens KleinjungSosei HeptaresVerified email at jkleinj.eu
Elena MarchioriRadboud UniversityVerified email at cs.ru.nl
Mohammed El-KebirAssistant ProfessorVerified email at illinois.edu
Gunnar W. KlauHeinrich Heine University DüsseldorfVerified email at hhu.de
Qingzhen Hou3BIO-BioInfo - BioModeling, BioInformatics & BioProcesses, Université Libre de BruxellesVerified email at ulb.ac.be
William R TaylorDivision head, Mathematical Biology, National Institute for Medical Research, UKVerified email at nimr.mrc.ac.uk
Wan FokkinkProfessor of Computer Science, Vrije Universiteit AmsterdamVerified email at vu.nl
Gerrit A Meijerprofessor of oncologic pathology, Netherlands Cancer Institute, AmsterdamVerified email at nki.nl
Ali MaySenior Associate Scientist at DSMVerified email at vu.nl
Annika JacobsenBioSemantics Group, Human Genetics, Leiden University Medical CenterVerified email at lumc.nl
Henri BalVU University AmsterdamVerified email at cs.vu.nl
Remond J.A. FijnemanNetherlands Cancer Institute, Amsterdam, The NetherlandsVerified email at nki.nl

Jaap Heringa

Professor of Bioinformatics, Vrije Universiteit Amsterdam

Verified email at vu.nl

Bioinformatics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
T-Coffee: A novel method for fast and accurate multiple sequence alignment C Notredame, DG Higgins, J Heringa Journal of molecular biology 302 (1), 205-217, 2000	8017	2000
The FAIR Guiding Principles for scientific data management and stewardship MD Wilkinson, M Dumontier, IJJ Aalbersberg, G Appleton, M Axton, ... Scientific data 3 (1), 1-9, 2016	7512	2016
PRALINE: a multiple sequence alignment toolbox that integrates homology-extended and secondary structure information VA Simossis, J Heringa Nucleic acids research 33 (suppl_2), W289-W294, 2005	525	2005
An analysis of protein domain linkers: their classification and role in protein folding RA George, J Heringa Protein Engineering, Design and Selection 15 (11), 871-879, 2002	435	2002
A simple and fast secondary structure prediction method using hidden neural networks K Lin, VA Simossis, WR Taylor, J Heringa Bioinformatics 21 (2), 152-159, 2005	339	2005
The KH domain occurs in a diverse set of RNA‐binding proteins that include the antiterminator NusA and is probably involved in binding to nucleic acid TJ Gibson, JD Thompson, J Heringa FEBS letters 324 (3), 361-366, 1993	258	1993
Two strategies for sequence comparison: profile-preprocessed and secondary structure-induced multiple alignment J Heringa Computers & chemistry 23 (3-4), 341-364, 1999	196	1999
General secretion signal for the mycobacterial type VII secretion pathway MH Daleke, R Ummels, P Bawono, J Heringa, ... Proceedings of the National Academy of Sciences 109 (28), 11342-11347, 2012	189	2012
Interaction of transmembrane helices by a knobs‐into‐holes packing characteristic of soluble coiled coils D Langosch, J Heringa Proteins: Structure, Function, and Bioinformatics 31 (2), 150-159, 1998	182	1998
The FAIR Guiding Principles for scientific data management and stewardship. Sci Data 3: 160018 MD Wilkinson, M Dumontier, IJ Aalbersberg, G Appleton, M Axton, A Baak, ...	171	2016
The FAIR Guiding Principles for scientific data management and stewardship. Scientific Data, 3, 160018 MD Wilkinson, M Dumontier, IJ Aalbersberg, G Appleton, M Axton, A Baak, ... As Open as Possible, as Closed as Necessary’–Managing legal and owner 3, 2016	161	2016
Tracking repeats using significance and transitivity R Szklarczyk, J Heringa Bioinformatics 20 (suppl_1), i311-i317, 2004	155	2004
Protein secondary structure prediction W Pirovano, J Heringa Data Mining Techniques for the Life Sciences, 327-348, 2010	137	2010
Homology-extended sequence alignment VA Simossis, J Kleinjung, J Heringa Nucleic acids research 33 (3), 816-824, 2005	136	2005
PRALINE™: a strategy for improved multiple alignment of transmembrane proteins W Pirovano, KA Feenstra, J Heringa Bioinformatics 24 (4), 492-497, 2008	129	2008
The ontogeny of a dominance hierarchy in colonies of the BumblebeeBombus terrestris (Hymenoptera, Apidae) A Van Doorn, J Heringa Insectes sociaux 33 (1), 3-25, 1986	127	1986
Side-chain clusters in protein structures and their role in protein folding J Heringa, P Argos Journal of molecular biology 220 (1), 151-171, 1991	124	1991
FAIR principles: interpretations and implementation considerations A Jacobsen, R de Miranda Azevedo, N Juty, D Batista, S Coles, R Cornet, ... Data intelligence 2 (1-2), 10-29, 2020	121	2020
SnapDRAGON: a method to delineate protein structural domains from sequence data RA George, J Heringa Journal of molecular biology 316 (3), 839-851, 2002	117	2002
Three-dimensional domain duplication, swapping and stealing J Heringa, WR Taylor Current opinion in structural biology 7 (3), 416-421, 1997	117	1997

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