Tommy Kaplan
Tommy Kaplan
Professor of Computer Science and Computational Biology, The Hebrew University
Verified email at - Homepage
Cited by
Cited by
Single-nucleosome mapping of histone modifications in S. cerevisiae
CL Liu, T Kaplan, M Kim, S Buratowski, SL Schreiber, N Friedman, ...
PLoS biology 3 (10), e328, 2005
Dynamics of replication-independent histone turnover in budding yeast
MF Dion, T Kaplan, M Kim, S Buratowski, N Friedman, OJ Rando
Science 315 (5817), 1405, 2007
Modeling dependencies in protein-DNA binding sites
Y Barash, G Elidan, N Friedman, T Kaplan
Proceedings of the seventh annual international conference on Research in …, 2003
Zelda binding in the early Drosophila melanogaster embryo marks regions subsequently activated at the maternal-to-zygotic transition
MM Harrison, XY Li, T Kaplan, MR Botchan, MB Eisen
PLoS Genet 7 (10), e1002266, 2011
Large-scale discovery of enhancers from human heart tissue
D May, MJ Blow, T Kaplan, DJ McCulley, BC Jensen, JA Akiyama, A Holt, ...
Nature genetics 44 (1), 89, 2012
Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing
M Yassour, T Kaplan, HB Fraser, JZ Levin, J Pfiffner, X Adiconis, ...
Proceedings of the National Academy of Sciences 106 (9), 3264-3269, 2009
Structure and function of a transcriptional network activated by the MAPK Hog1
AP Capaldi, T Kaplan, Y Liu, N Habib, A Regev, N Friedman, EK O'Shea
Nature genetics 40 (11), 1300, 2008
A high-resolution enhancer atlas of the developing telencephalon
A Visel, L Taher, H Girgis, D May, O Golonzhka, RV Hoch, GL McKinsey, ...
Cell 152 (4), 895-908, 2013
Quantitative models of the mechanisms that control genome-wide patterns of transcription factor binding during early Drosophila development
T Kaplan, XY Li, PJ Sabo, S Thomas, JA Stamatoyannopoulos, MD Biggin, ...
PLoS Genet 7 (2), e1001290, 2011
Cell cycle–and chaperone-mediated regulation of H3K56ac incorporation in yeast
T Kaplan, CL Liu, JA Erkmann, J Holik, M Grunstein, PD Kaufman, ...
PLoS Genet 4 (11), e1000270, 2008
Ab initio prediction of transcription factor targets using structural knowledge
T Kaplan, N Friedman, H Margalit
PLoS Comput Biol 1 (1), e1, 2005
Establishment of regions of genomic activity during the Drosophila maternal to zygotic transition
XY Li, MM Harrison, JE Villalta, T Kaplan, MB Eisen
Elife 3, e03737, 2014
Zelda is differentially required for chromatin accessibility, transcription factor binding, and gene expression in the early Drosophila embryo
KN Schulz, ER Bondra, A Moshe, JE Villalta, JD Lieb, T Kaplan, ...
Genome research 25 (11), 1715-1726, 2015
Comprehensive human cell-type methylation atlas reveals origins of circulating cell-free DNA in health and disease
J Moss, J Magenheim, D Neiman, H Zemmour, N Loyfer, A Korach, ...
Nature communications 9 (1), 1-12, 2018
Extensive divergence of transcription factor binding in Drosophila embryos with highly conserved gene expression
M Paris, T Kaplan, XY Li, JE Villalta, SE Lott, MB Eisen
PLoS Genet 9 (9), e1003748, 2013
Roles for H2A. Z and its acetylation in GAL1 transcription and gene induction, but not GAL1-transcriptional memory
JE Halley, T Kaplan, AY Wang, MS Kobor, J Rine
PLoS Biol 8 (6), e1000401, 2010
High throughput determination of TGFβ1/SMAD3 targets in A549 lung epithelial cells
Y Zhang, D Handley, T Kaplan, H Yu, AS Bais, T Richards, KV Pandit, ...
PloS one 6 (5), e20319, 2011
Taf7l cooperates with Trf2 to regulate spermiogenesis
H Zhou, I Grubisic, K Zheng, Y He, PJ Wang, T Kaplan, R Tjian
Proceedings of the National Academy of Sciences 110 (42), 16886-16891, 2013
A novel Bayesian DNA motif comparison method for clustering and retrieval
N Habib, T Kaplan, H Margalit, N Friedman
PLoS Comput Biol 4 (2), e1000010, 2008
Promoter-enhancer interactions identified from Hi-C data using probabilistic models and hierarchical topological domains
G Ron, Y Globerson, D Moran, T Kaplan
Nature Communications 8 (1), 2237, 2017
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