Jai Ram Rideout
Jai Ram Rideout
Invitae
Verified email at invitae.com
Title
Cited by
Cited by
Year
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
34392019
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
34392019
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
34392019
Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin
NA Bokulich, BD Kaehler, JR Rideout, M Dillon, E Bolyen, R Knight, ...
Microbiome 6 (1), 1-17, 2018
11152018
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints, 2018
6272018
The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome
D McDonald, JC Clemente, J Kuczynski, JR Rideout, J Stombaugh, ...
Gigascience 1 (1), 2047-217X-1-7, 2012
5962012
Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences
JR Rideout, Y He, JA Navas-Molina, WA Walters, LK Ursell, SM Gibbons, ...
PeerJ 2, e545, 2014
4852014
Temporal variability is a personalized feature of the human microbiome
GE Flores, JG Caporaso, JB Henley, JR Rideout, D Domogala, J Chase, ...
Genome biology 15 (12), 1-13, 2014
3102014
The interpersonal and intrapersonal diversity of human-associated microbiota in key body sites
LK Ursell, JC Clemente, JR Rideout, D Gevers, JG Caporaso, R Knight
Journal of Allergy and Clinical Immunology 129 (5), 1204-1208, 2012
2872012
Qiita: rapid, web-enabled microbiome meta-analysis
A Gonzalez, JA Navas-Molina, T Kosciolek, D McDonald, ...
Nature methods 15 (10), 796-798, 2018
2242018
Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity
Y He, JG Caporaso, XT Jiang, HF Sheng, SM Huse, JR Rideout, ...
Microbiome 3 (1), 1-10, 2015
1342015
q2-longitudinal: longitudinal and paired-sample analyses of microbiome data
NA Bokulich, MR Dillon, Y Zhang, JR Rideout, E Bolyen, H Li, PS Albert, ...
MSystems 3 (6), e00219-18, 2018
662018
QIIME 2: reproducible, interactive, scalable, and extensible microbiome data science
E Boylen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints 6, e27295v2, 2018
502018
mockrobiota: a public resource for microbiome bioinformatics benchmarking
NA Bokulich, JR Rideout, WG Mercurio, A Shiffer, B Wolfe, CF Maurice, ...
Msystems 1 (5), e00062-16, 2016
452016
Gut microbial and short-chain fatty acid profiles in adults with chronic constipation before and after treatment with lubiprostone
DW Kang, JK DiBaise, ZE Ilhan, MD Crowell, JR Rideout, JG Caporaso, ...
Anaerobe 33, 33-41, 2015
422015
Ghost-tree: creating hybrid-gene phylogenetic trees for diversity analyses
J Fouquier, JR Rideout, E Bolyen, J Chase, A Shiffer, D McDonald, ...
Microbiome 4 (1), 1-10, 2016
292016
A standardized, extensible framework for optimizing classification improves marker-gene taxonomic assignments
NA Bokulich, JR Rideout, E Kopylova, E Bolyen, J Patnode, Z Ellett, ...
PeerJ PrePrints 3, e934v2, 2015
242015
Keemei: cloud-based validation of tabular bioinformatics file formats in Google Sheets
JR Rideout, JH Chase, E Bolyen, G Ackermann, A González, R Knight, ...
GigaScience 5 (1), s13742-016-0133-6, 2016
172016
Optimizing taxonomic classification of marker gene sequences
NA Bokulich, BD Kaehler, JR Rideout, M Dillon, E Bolyen, R Knight, ...
PeerJ Preprints, 2017
162017
Optimizing taxonomic classification of marker gene amplicon sequences
NA Bokulich, BD Kaehler, JR Rideout, M Dillon, E Bolyen, R Knight, ...
PeerJ Preprints 6, e3208v2, 2018
152018
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Articles 1–20