| The transcriptional landscape of the mammalian genome P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ... science 309 (5740), 1559-1563, 2005 | 3465 | 2005 |
| Assessing computational tools for the discovery of transcription factor binding sites M Tompa, N Li, TL Bailey, GM Church, B De Moor, E Eskin, AV Favorov, ... Nature biotechnology 23 (1), 137-144, 2005 | 1505 | 2005 |
| Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes G Pavesi, P Mereghetti, G Mauri, G Pesole Nucleic acids research 32 (suppl_2), W199-W203, 2004 | 572 | 2004 |
| An algorithm for finding signals of unknown length in DNA sequences G Pavesi, G Mauri, G Pesole Bioinformatics 17 (suppl_1), S207-S214, 2001 | 463 | 2001 |
| Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes F Zambelli, G Pesole, G Pavesi Nucleic acids research 37 (suppl_2), W247-W252, 2009 | 326 | 2009 |
| UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs G Grillo, A Turi, F Licciulli, F Mignone, S Liuni, S Banfi, VA Gennarino, ... Nucleic acids research 38 (suppl_1), D75-D80, 2010 | 309 | 2010 |
| Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing DS Horner, G Pavesi, T Castrignano, PDO De Meo, S Liuni, M Sammeth, ... Briefings in bioinformatics 11 (2), 181-197, 2010 | 212 | 2010 |
| Motif discovery and transcription factor binding sites before and after the next-generation sequencing era F Zambelli, G Pesole, G Pavesi Briefings in bioinformatics 14 (2), 225-237, 2013 | 147 | 2013 |
| The histone-like NF-Y is a bifunctional transcription factor M Ceribelli, D Dolfini, D Merico, R Gatta, AM Vigano, G Pavesi, ... Molecular and cellular biology 28 (6), 2047-2058, 2008 | 127 | 2008 |
| In silico representation and discovery of transcription factor binding sites G Pavesi, G Mauri, G Pesole Briefings in bioinformatics 5 (3), 217-236, 2004 | 122 | 2004 |
| A perspective of promoter architecture from the CCAAT box D Dolfini, F Zambelli, G Pavesi, R Mantovani Cell cycle 8 (24), 4127-4137, 2009 | 114 | 2009 |
| NF-Y coassociates with FOS at promoters, enhancers, repetitive elements, and inactive chromatin regions, and is stereo-positioned with growth-controlling transcription factors JD Fleming, G Pavesi, P Benatti, C Imbriano, R Mantovani, K Struhl Genome research 23 (8), 1195-1209, 2013 | 108 | 2013 |
| Identification of pathways directly regulated by SHORT VEGETATIVE PHASE during vegetative and reproductive development in Arabidopsis V Gregis, F Andrés, A Sessa, RF Guerra, S Simonini, JL Mateos, S Torti, ... Genome biology 14 (6), R56, 2013 | 107 | 2013 |
| MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes G Pavesi, P Mereghetti, F Zambelli, M Stefani, G Mauri, G Pesole Nucleic acids research 34 (suppl_2), W566-W570, 2006 | 89 | 2006 |
| SpliceAid-F: a database of human splicing factors and their RNA-binding sites M Giulietti, F Piva, M D’Antonio, P D’Onorio De Meo, D Paoletti, ... Nucleic acids research 41 (D1), D125-D131, 2013 | 84 | 2013 |
| Tissue-specific mtDNA abundance from exome data and its correlation with mitochondrial transcription, mass and respiratory activity AM D'Erchia, A Atlante, G Gadaleta, G Pavesi, M Chiara, C De Virgilio, ... Mitochondrion 20, 13-21, 2014 | 82 | 2014 |
| RNAProfile: an algorithm for finding conserved secondary structure motifs in unaligned RNA sequences G Pavesi, G Mauri, M Stefani, G Pesole Nucleic acids research 32 (10), 3258-3269, 2004 | 75 | 2004 |
| miR-17-92 fine-tunes MYC expression and function to ensure optimal B cell lymphoma growth M Mihailovich, M Bremang, V Spadotto, D Musiani, E Vitale, G Varano, ... Nature communications 6 (1), 1-15, 2015 | 67 | 2015 |
| PscanChIP: finding over-represented transcription factor-binding site motifs and their correlations in sequences from ChIP-Seq experiments F Zambelli, G Pesole, G Pavesi Nucleic acids research 41 (W1), W535-W543, 2013 | 67 | 2013 |
| Gene trap lines identify Arabidopsis genes expressed in stomatal guard cells M Galbiati, L Simoni, G Pavesi, E Cominelli, P Francia, A Vavasseur, ... The Plant Journal 53 (5), 750-762, 2008 | 64 | 2008 |
Graziano PesoleProfessor of Molecular Biology, Università degli Studi di Bari and National Research CouncilVerified email at uniba.it
