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Joe Parker
Joe Parker
Research Fellow - National Biofilms Innovation Centre, Southampton
Verified email at kitson-consulting.co.uk - Homepage
Title
Cited by
Cited by
Year
Correlating viral phenotypes with phylogeny: accounting for phylogenetic uncertainty
J Parker, A Rambaut, OG Pybus
Infection, Genetics and Evolution 8 (3), 239-246, 2008
4172008
Genome-wide signatures of convergent evolution in echolocating mammals
J Parker, G Tsagkogeorga, JA Cotton, Y Liu, P Provero, E Stupka, ...
Nature 502 (7470), 228-231, 2013
3562013
Phylogenomic analyses elucidate the evolutionary relationships of bats
G Tsagkogeorga, J Parker, E Stupka, JA Cotton, SJ Rossiter
Current Biology 23 (22), 2262-2267, 2013
1432013
The mode and tempo of hepatitis C virus evolution within and among hosts
RR Gray, J Parker, P Lemey, M Salemi, A Katzourakis, OG Pybus
BMC evolutionary biology 11 (1), 1-10, 2011
1422011
Field-based species identification of closely-related plants using real-time nanopore sequencing
J Parker, AJ Helmstetter, D Devey, T Wilkinson, AST Papadopulos
Scientific reports 7 (1), 1-8, 2017
702017
Evolutionary and phylogenetic analysis of the hepaciviruses and pegiviruses
J Thézé, S Lowes, J Parker, OG Pybus
Genome Biology and Evolution 7 (11), 2996-3008, 2015
632015
Molecular epidemiology and phylogeny reveals complex spatial dynamics of endemic canine parvovirus
SR Clegg, KP Coyne, J Parker, S Dawson, SA Godsall, G Pinchbeck, ...
Journal of virology, JVI. 01576-10v1, 2011
51*2011
Full-length characterization of hepatitis C virus subtype 3a reveals novel hypervariable regions under positive selection during acute infection
I Humphreys, V Fleming, P Fabris, J Parker, B Schulenberg, A Brown, ...
Journal of virology 83 (22), 11456-11466, 2009
362009
Safety and immunogenicity of novel recombinant BCG and modified vaccinia virus Ankara vaccines in neonate rhesus macaques
M Rosario, J Fulkerson, S Soneji, J Parker, EJ Im, N Borthwick, ...
Journal of virology 84 (15), 7815-7821, 2010
332010
Estimating the date of origin of an HIV-1 circulating recombinant form
KK Tee, OG Pybus, J Parker, KP Ng, A Kamarulzaman, Y Takebe
Virology 387 (1), 229-234, 2009
322009
Diagnostic accuracy of loop-mediated isothermal amplification coupled to nanopore sequencing (LamPORE) for the detection of SARS-CoV-2 infection at scale in symptomatic and …
A Ptasinska, C Whalley, A Bosworth, C Poxon, C Bryer, N Machin, ...
Clinical microbiology and infection 27 (9), 1348. e1-1348. e7, 2021
192021
Generation of neutralizing antibodies and divergence of SIVmac239 in cynomolgus macaques following short-term early antiretroviral therapy
G Özkaya Şahin, EJ Bowles, J Parker, H Uchtenhagen, E Sheik-Khalil, ...
PLoS pathogens 6 (9), e1001084, 2010
152010
Selected HIV-1 Env trimeric formulations act as potent immunogens in a rabbit vaccination model
L Heyndrickx, G Stewart-Jones, M Jansson, H Schuitemaker, E Bowles, ...
PloS one 8 (9), e74552, 2013
142013
Speciation processes in putative island endemic sister bat species: false impressions from mitochondrial DNA and microsatellite data
HC Kuo, SF Chen, YP Fang, JA Cotton, JD Parker, G Csorba, BK Lim, ...
Molecular Ecology 24 (23), 5910-5926, 2015
132015
A framework for predicting soft-fruit yields and phenology using embedded, networked microsensors, coupled weather models and machine-learning techniques
MA Lee, A Monteiro, A Barclay, J Marcar, M Miteva-Neagu, J Parker
Computers and Electronics in Agriculture 168, 105103, 2020
122020
Rapid parallel adaptation to anthropogenic heavy metal pollution
AST Papadopulos, AJ Helmstetter, OG Osborne, AA Comeault, DP Wood, ...
Molecular biology and evolution 38 (9), 3724-3736, 2021
82021
RT-LAMP has high accuracy for detecting SARS-CoV-2 in saliva and naso/oropharyngeal swabs from asymptomatic and symptomatic individuals
SP Kidd, D Burns, B Armson, AD Beggs, ELA Howson, A Williams, G Snell, ...
medRxiv, 2021.06. 28.21259398, 2022
62022
Rapid, raw-read reference and identification (R4IDs): A flexible platform for rapid generic species ID using long-read sequencing technology
J Parker, A Helmstetter, J Crowe, J Iacona, D Devey, AST Papadopulos
bioRxiv, 281048, 2018
22018
Reverse-Transcription Loop-Mediated Isothermal Amplification Has High Accuracy for Detecting Severe Acute Respiratory Syndrome Coronavirus 2 in Saliva and Nasopharyngeal …
SP Kidd, D Burns, B Armson, AD Beggs, ELA Howson, A Williams, G Snell, ...
The Journal of Molecular Diagnostics 24 (4), 320-336, 2022
12022
Lightweight bioinformatics: evaluating the utility of Single Board Computer (SBC) clusters for portable, scalable Real-Time Bioinformatics in fieldwork environments via …
J Parker
bioRxiv, 337212, 2018
12018
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