| Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88 HJ Pel, JH de Winde, DB Archer, PS Dyer, G Hofmann, PJ Schaap, ... Nature biotechnology 25 (2), 221-231, 2007 | 1160 | 2007 |
| Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88 MR Andersen, MP Salazar, PJ Schaap, PJI van de Vondervoort, D Culley, ... Genome research 21 (6), 885-897, 2011 | 336 | 2011 |
| RNA targeting by the type III-A CRISPR-Cas Csm complex of Thermus thermophilus RHJ Staals, Y Zhu, DW Taylor, JE Kornfeld, K Sharma, A Barendregt, ... Molecular cell 56 (4), 518-530, 2014 | 223 | 2014 |
| Structure and activity of the RNA-targeting Type III-B CRISPR-Cas complex of Thermus thermophilus RHJ Staals, Y Agari, S Maki-Yonekura, Y Zhu, DW Taylor, E Van Duijn, ... Molecular cell 52 (1), 135-145, 2013 | 212 | 2013 |
| 3DM: systematic analysis of heterogeneous superfamily data to discover protein functionalities RK Kuipers, HJ Joosten, WJH van Berkel, NGH Leferink, E Rooijen, ... Proteins: Structure, Function, and Bioinformatics 78 (9), 2101-2113, 2010 | 150 | 2010 |
| NG-Tax, a highly accurate and validated pipeline for analysis of 16S rRNA amplicons from complex biomes J Ramiro-Garcia, GDA Hermes, C Giatsis, D Sipkema, EG Zoetendal, ... F1000Research 5, 2016 | 118 | 2016 |
| Assessment of the pectin degrading enzyme network of Aspergillus niger by functional genomics ES Martens-Uzunova, PJ Schaap Fungal Genetics and Biology 46 (1), S170-S179, 2009 | 113 | 2009 |
| TheAgaricus bisporus hypAgene encodes a hydrophobin and specifically accumulates in peel tissue of mushroom caps during fruit body development PWJ De Groot, PJ Schaap, ASM Sonnenberg, J Visser, ... Journal of molecular biology 257 (5), 1008-1018, 1996 | 112 | 1996 |
| An iterative workflow for mining the human intestinal metaproteome K Rooijers, C Kolmeder, C Juste, J Doré, M de Been, S Boeren, P Galan, ... BMC genomics 12 (1), 1-11, 2011 | 106 | 2011 |
| A comprehensive metatranscriptome analysis pipeline and its validation using human small intestine microbiota datasets MM Leimena, J Ramiro-Garcia, M Davids, B van den Bogert, H Smidt, ... BMC genomics 14 (1), 1-14, 2013 | 101 | 2013 |
| Oxaloacetate hydrolase, the C–C bond lyase of oxalate secreting fungi Y Han, HJ Joosten, W Niu, Z Zhao, PS Mariano, M McCalman, J Van Kan, ... Journal of Biological Chemistry 282 (13), 9581-9590, 2007 | 96 | 2007 |
| Identification of a gatekeeper residue that prevents dehydrogenases from acting as oxidases NGH Leferink, MW Fraaije, HJ Joosten, PJ Schaap, A Mattevi, ... Journal of Biological Chemistry 284 (7), 4392-4397, 2009 | 91 | 2009 |
| An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data M Braaksma, ES Martens-Uzunova, PJ Punt, PJ Schaap BMC genomics 11 (1), 1-11, 2010 | 90 | 2010 |
| Genome-scale metabolic model for Lactococcus lactis MG1363 and its application to the analysis of flavor formation NAL Flahaut, A Wiersma, B van de Bunt, DE Martens, PJ Schaap, ... Applied microbiology and biotechnology 97 (19), 8729-8739, 2013 | 80 | 2013 |
| Correlated mutation analyses on super‐family alignments reveal functionally important residues RKP Kuipers, HJ Joosten, E Verwiel, S Paans, J Akerboom, ... Proteins: Structure, Function, and Bioinformatics 76 (3), 608-616, 2009 | 79 | 2009 |
| Identification and functional analysis of the nuclear localization signals of ribosomal protein L25 from Saccharomyces cerevisiae PJ Schaap, J van't Riet, CL Woldringh, HA Raué Journal of molecular biology 221 (1), 225-237, 1991 | 79 | 1991 |
| An evolutionary conserved D-galacturonic acid metabolic pathway operates across filamentous fungi capable of pectin degradation ES Martens-Uzunova, PJ Schaap Fungal Genetics and Biology 45 (11), 1449-1457, 2008 | 76 | 2008 |
| MEMOTE for standardized genome-scale metabolic model testing C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ... Nature biotechnology 38 (3), 272-276, 2020 | 75 | 2020 |
| A genomic view on syntrophic versus non-syntrophic lifestyle in anaerobic fatty acid degrading communities P Worm, JJ Koehorst, M Visser, VT Sedano-Núñez, PJ Schaap, ... Biochimica et Biophysica Acta (BBA)-Bioenergetics 1837 (12), 2004-2016, 2014 | 73 | 2014 |
| A new group of exo-acting family 28 glycoside hydrolases of Aspergillus niger that are involved in pectin degradation ES Martens-Uzunova, JS Zandleven, JAE Benen, H Awad, HJ Kools, ... Biochemical Journal 400 (1), 43-52, 2006 | 73 | 2006 |
Jasper J. KoehorstWageningen University & ResearchVerified email at wur.nl
