Raymond K. Auerbach
Raymond K. Auerbach
Data Scientist
Verified email at aya.yale.edu
Title
Cited by
Cited by
Year
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
114902012
A User's Guide to the Encyclopedia of DNA Elements (ENCODE)
B Wold, A Mortazavi, B Williams, G Marinov, D Trout, B King, K McCue, ...
PLoS Biology 9 (4), Art. No. e1001046, 2011
12102011
Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation
G Li, X Ruan, RK Auerbach, KS Sandhu, M Zheng, P Wang, HM Poh, ...
Cell 148 (1-2), 84-98, 2012
10732012
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project
MB Gerstein, ZJ Lu, EL Van Nostrand, C Cheng, BI Arshinoff, T Liu, ...
Science 330 (6012), 1775-1787, 2010
9402010
PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls
J Rozowsky, G Euskirchen, RK Auerbach, ZD Zhang, T Gibson, ...
Nature biotechnology 27 (1), 66-75, 2009
6672009
The real cost of sequencing: higher than you think!
A Sboner, XJ Mu, D Greenbaum, RK Auerbach, MB Gerstein
Genome biology 12 (8), 1-10, 2011
3952011
Comparative analysis of the transcriptome across distant species
MB Gerstein, J Rozowsky, KK Yan, D Wang, C Cheng, JB Brown, ...
Nature 512 (7515), 445-448, 2014
2502014
Mapping accessible chromatin regions using Sono-Seq
RK Auerbach, G Euskirchen, J Rozowsky, N Lamarre-Vincent, ...
Proceedings of the National Academy of Sciences 106 (35), 14926-14931, 2009
2282009
Diverse roles and interactions of the SWI/SNF chromatin remodeling complex revealed using global approaches
GM Euskirchen, RK Auerbach, E Davidov, TA Gianoulis, G Zhong, ...
PLoS Genet 7 (3), e1002008, 2011
2212011
Efficient yeast ChIP-Seq using multiplex short-read DNA sequencing
P Lefrançois, GM Euskirchen, RK Auerbach, J Rozowsky, T Gibson, ...
BMC genomics 10 (1), 1-18, 2009
1762009
Genome-wide identification of binding sites defines distinct functions for Caenorhabditis elegans PHA-4/FOXA in development and environmental response
M Zhong, W Niu, ZJ Lu, M Sarov, JI Murray, J Janette, D Raha, ...
PLoS Genet 6 (2), e1000848, 2010
1752010
Phylogeography of Francisella tularensis: global expansion of a highly fit clone
AJ Vogler, D Birdsell, LB Price, JR Bowers, SM Beckstrom-Sternberg, ...
Journal of bacteriology 191 (8), 2474-2484, 2009
1742009
Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer
T Pearson, P Giffard, S Beckstrom-Sternberg, R Auerbach, H Hornstra, ...
BMC biology 7 (1), 1-14, 2009
1652009
SWI/SNF chromatin-remodeling factors: multiscale analyses and diverse functions
G Euskirchen, RK Auerbach, M Snyder
Journal of Biological Chemistry 287 (37), 30897-30905, 2012
1442012
Genomic islands from five strains of Burkholderia pseudomallei
A Tuanyok, BR Leadem, RK Auerbach, SM Beckstrom-Sternberg, ...
BMC genomics 9 (1), 1-14, 2008
962008
A horizontal gene transfer event defines two distinct groups within Burkholderia pseudomallei that have dissimilar geographic distributions
A Tuanyok, RK Auerbach, TS Brettin, DC Bruce, AC Munk, JC Detter, ...
Journal of bacteriology 189 (24), 9044-9049, 2007
912007
Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data
ZJ Lu, KY Yip, G Wang, C Shou, LDW Hillier, E Khurana, A Agarwal, ...
Genome research 21 (2), 276-285, 2011
782011
Relating genes to function: identifying enriched transcription factors using the ENCODE ChIP-Seq significance tool
RK Auerbach, B Chen, AJ Butte
Bioinformatics 29 (15), 1922-1924, 2013
682013
Complete genomic characterization of a pathogenic A. II strain of Francisella tularensis subspecies tularensis
SM Beckstrom-Sternberg, RK Auerbach, S Godbole, JV Pearson, ...
PloS one 2 (9), e947, 2007
662007
Phenotypic and functional characterization of Bacillus anthracis biofilms
K Lee, JW Costerton, J Ravel, RK Auerbach, DM Wagner, P Keim, ...
Microbiology 153 (6), 1693-1701, 2007
502007
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Articles 1–20