Fabio Rinaldi

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Gerold SchneiderPD in Computational Linguistics, Computing Scientist & Lecturer in English Linguistics, ZurichVerified email at ifi.uzh.ch
Kaarel KaljurandNuance CommunicationsVerified email at nuance.com
Simon ClematideInstitute of Computational LinguisticsVerified email at uzh.ch
Julio Collado-VidesProfessor of Computational Genomics, CCG, UNAMVerified email at ccg.unam.mx
Alberto LavelliFBK-irstVerified email at fbk.eu
Martin RomackerF. Hoffmann-La RocheVerified email at roche.com
Rolf SchwitterMacquarie UniversityVerified email at mq.edu.au
Diego MollaMacquarie UniversityVerified email at mq.edu.au
Luis José Muñiz RascadoCCG/UNAMVerified email at ccg.unam.mx
Zhiyong LuDeputy Director for Literature Search, NCBI; Senior Investigator, NCBI-NLMVerified email at nih.gov
Alberto Santos-ZavaletaScientific Database CuratorVerified email at ccg.unam.mx
John McNaughtDeputy Director, National Centre for Text Mining, School of Computer Science, University of ManchesterVerified email at manchester.ac.uk
Cathy WuUniversity of DelawareVerified email at udel.edu
Gian Piero ZarriSTIH Laboratory, Sorbonne University, France (Senior Research Associate)Verified email at noos.fr
Daniela Ledezma-TejeidaETH Postdoctoral Fellow, ETH ZürichVerified email at imsb.biol.ethz.ch
Dietrich Rebholz-SchuhmannZB MED -- Information Center for Life SciencesVerified email at zbmed.de
John BatemanBremen UniversityVerified email at uni-bremen.de
Rezarta IslamajNational Center for Biotechnology Information, National Library of Medicine, National Institutes ofVerified email at nih.gov
W John WilburSenior scientist, National Center for Biotechnology InformationVerified email at ncbi.nlm.nih.gov
Yifan PengAssistant Professor at Weill Cornell MedicineVerified email at med.cornell.edu

Fabio Rinaldi

Dalle Molle Institute for Artificial Intelligence Research (IDSIA), Lugano

Verified email at idsia.ch - Homepage

Computational Linguistics Text Mining Information Extraction (in particular in the biomedical domain)


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RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond S Gama-Castro, H Salgado, A Santos-Zavaleta, D Ledezma-Tejeida, ... Nucleic acids research 44 (D1), D133-D143, 2016	459	2016
BioC: A minimalist approach to interoperability for biomedical text processing DC Comeau, RI Doğan, P Ciccarese, KB Cohen, M Krallinger, F Leitner, ... Database 2013, bat064, 2013	184	2013
Natural Language Processing of Clinical Notes on Chronic Diseases: Systematic Review S Sheikhalishahi, R Miotto, JT Dudley, A Lavelli, F Rinaldi, V Osmani JMIR Medical Informatics 7 (2), e12239, 2019	171	2019
The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text M Krallinger, M Vazquez, F Leitner, D Salgado, A Chatr-Aryamontri, ... BMC bioinformatics 12 (S8), S3, 2011	170	2011
The gene normalization task in BioCreative III Z Lu, HY Kao, CH Wei, M Huang, J Liu, CJ Kuo, CN Hsu, RTH Tsai, ... BMC bioinformatics 12 (S8), S2, 2011	160	2011
FACILE: Description of the NE System Used for MUC-7 WJ Black, F Rinaldi, D Mowatt Proceedings of the 7th Message Understanding Conference, 1998	145	1998
The generalized upper model 2.0 JA Bateman, R Henschel, F Rinaldi Proceedings of the ECAI94 Workshop: Comparison of Implemented Ontologies, 1995	142	1995
Exploiting paraphrases in a question answering system F Rinaldi, J Dowdall, K Kaljurand, M Hess, D Mollá Proceedings of the second international workshop on Paraphrasing-Volume 16 …, 2003	100	2003
BioCreative III interactive task: an overview CN Arighi, PM Roberts, S Agarwal, S Bhattacharya, G Cesareni, ... BMC bioinformatics 12 (S8), S4, 2011	99	2011
The generalized italian, german, english upper model J Bateman, B Magnini, F Rinaldi, R Henschel	98	1994
Mining of relations between proteins over biomedical scientific literature using a deep-linguistic approach F Rinaldi, G Schneider, K Kaljurand, M Hess, C Andronis, O Konstandi, ... Artificial intelligence in medicine 39 (2), 127-136, 2007	97	2007
OntoGene in BioCreative II. 5 F Rinaldi, G Schneider, K Kaljurand, S Clematide, T Vachon, M Romacker IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB) 7 …, 2010	88	2010
OntoGene in BioCreative II F Rinaldi, T Kappeler, K Kaljurand, G Schneider, M Klenner, S Clematide, ... Genome Biology 9 (Suppl 2), S13, 2008	79	2008
An environment for relation mining over richly annotated corpora: the case of GENIA F Rinaldi, G Schneider, K Kaljurand, M Hess, M Romacker BMC bioinformatics 7 (S3), S3, 2006	76	2006
Assessment of NER solutions against the first and second CALBC Silver Standard Corpus D Rebholz-Schuhmann, AJ Yepes, C Li, S Kafkas, I Lewin, N Kang, ... Journal of Biomedical Semantics 2 (5), 1-12, 2011	69	2011
Mining relations in the GENIA corpus F Rinaldi, G Schneider, K Kaljurand, J Dowdall, C Andronis, A Persidis, ... Proceedings of the Second European Workshop on Data Mining and Text Mining …, 2004	68	2004
Answering questions in the genomics domain F Rinaldi, J Dowdall, G Schneider, A Persidis Proceedings of the ACL 2004 Workshop on Question Answering in Restricted …, 2004	64	2004
Attempto controlled english: A knowledge representation language readable by humans and machines NE Fuchs, S Höfler, K Kaljurand, F Rinaldi, G Schneider Reasoning Web, 213-250, 2005	54	2005
Facile: Classifying texts integrating pattern matching and information extraction F Ciravegna, A Lavelli, N Mana, J Matiasek, L Gilardoni, S Mazza, ... INTERNATIONAL JOINT CONFERENCE ON ARTIFICIAL INTELLIGENCE 16, 890-897, 1999	44	1999
A symbolic approach to automatic multiword term structuring E SanJuan, J Dowdall, F Ibekwe-SanJuan, F Rinaldi Computer Speech & Language 19 (4), 524-542, 2005	39	2005

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