Advait Balaji

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Todd J. TreangenAssociate Professor, Department of Computer Science, Rice UniversityVerified email at rice.edu
Ryan Leo ElworthPostdoctoral Scientist, Rice UniversityVerified email at rice.edu
Michael NuteRice UniversityVerified email at rice.edu
Bryce KilleRice UniversityVerified email at rice.edu
Nicolae SapovalPhD Student, Department of Computer Science, Rice UniversityVerified email at rice.edu
Richard BaraniukC. Sidney Burrus Professor, Electrical & Computer Engineering, Rice UniversityVerified email at rice.edu
CJ BarberanMicrosoftVerified email at rice.edu
Santiago SegarraAssistant Professor, Electrical and Computer Engineering, Rice UniversityVerified email at rice.edu
Veeky BathsProfessor,Cognitive Neuroscience Lab, BITS Pilani Goa CampusVerified email at goa.bits-pilani.ac.in
Krista (Fritz) TernusSignature Science, LLCVerified email at signaturescience.com
Vicky YaoRice UniversityVerified email at rice.edu
Amirali AghazadehECE, Georgia TechVerified email at gatech.edu
Cameron WolfePhD Student, Rice UniversityVerified email at rice.edu
Mohammadamin EdrisiPh.D. Student of Computer Science, Rice UniversityVerified email at rice.edu
Zhi YanDepartment of Computer Science, Rice UniversityVerified email at rice.edu
Chen DunPh.D, Rice UniversityVerified email at rice.edu
Anastasios KyrillidisAssistant Professor, Computer Science Department, Rice UniversityVerified email at rice.edu
Dinler A AntunesAssistant Professor of Computational Biology at the University of HoustonVerified email at uh.edu
Luay NakhlehProfessor of Computer Science, Rice UniversityVerified email at rice.edu
Valliappan C APhD Student, McGill (Research Intern @ Ubisoft)Verified email at mail.mcgill.ca

Advait Balaji

Rice University

Verified email at rice.edu

Metagenomics Machine Learning Graph Theory


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Current progress and open challenges for applying deep learning across the biosciences N Sapoval, A Aghazadeh, MG Nute, DA Antunes, A Balaji, R Baraniuk, ... Nature Communications 13 (1), 1728, 2022	147	2022
EEG-based classification of bilingual unspoken speech using ANN A Balaji, A Haldar, K Patil, TS Ruthvik, CA Valliappan, M Jartarkar, ... 2017 39th Annual International Conference of the IEEE Engineering in …, 2017	35	2017
To Petabytes and beyond: recent advances in probabilistic and signal processing algorithms and their application to metagenomics RAL Elworth, Q Wang, PK Kota, CJ Barberan, B Coleman, A Balaji, ... Nucleic Acids Research, 2020	34	2020
SeqScreen: accurate and sensitive functional screening of pathogenic sequences via ensemble learning A Balaji, B Kille, AD Kappell, GD Godbold, M Diep, RAL Elworth, Z Qian, ... Genome biology 23 (1), 133, 2022	26	2022
Type II diabetes mellitus and obesity: Common links, existing therapeutics and future developments S Banerjee, I Talukdar, A Banerjee, A Gupta, A Balaji, R Aduri Journal of Biosciences 44, 1-13, 2019	21	2019
Multiple genome alignment in the telomere-to-telomere assembly era B Kille, A Balaji, FJ Sedlazeck, M Nute, TJ Treangen Genome Biology 23 (1), 182, 2022	18	2022
A Portable real time ECG device for arrhythmia detection using raspberry pi CA Valliappan, A Balaji, SR Thandayam, P Dhingra, V Baths Wireless Mobile Communication and Healthcare: 6th International Conference …, 2017	13*	2017
SeqScreen: a biocuration platform for robust taxonomic and biological process characterization of nucleic acid sequences of interest D Albin, D Nasko, RAL Elworth, J Lu, A Balaji, C Diaz, N Shah, J Selengut, ... 2019 IEEE international conference on bioinformatics and biomedicine (BIBM …, 2019	10	2019
KOMB: K-core based de novo characterization of copy number variation in microbiomes A Balaji, N Sapoval, C Seto, RAL Elworth, Y Fu, MG Nute, T Savidge, ... Computational and Structural Biotechnology Journal 20, 3208-3222, 2022	6*	2022
TNF-alpha regulates alternative splicing of genes participating in pathways of crucial metabolic syndromes; a transcriptome wide study JM Louis, C Vaz, A Balaji, V Tanavde, I Talukdar Cytokine 125, 154815, 2020	5	2020
An international virtual hackathon to build tools for the analysis of structural variants within species ranging from coronaviruses to vertebrates AM Mc Cartney, M Mahmoud, M Jochum, DP Agustinho, B Zorman, ... F1000Research 10, 2021	4	2021
The RNA secondary structural variation in the cyclization elements of the dengue genome and the possible implications in pathogenicity B Mishra, A Balaji, H Beesetti, S Swaminathan, R Aduri VirusDisease 31, 299-307, 2020	3	2020
GraSSRep: Graph-Based Self-Supervised Learning for Repeat Detection in Metagenomic Assembly A Azizpour, A Balaji, TJ Treangen, S Segarra arXiv preprint arXiv:2402.09381, 2024		2024
SeqScreen-Nano: a computational platform for streaming, in-field characterization of microbial pathogens A Balaji, Y Liu, MG Nute, B Hu, A D. Kappell, D S. Lesassier, ... Proceedings of the 14th ACM International Conference on Bioinformatics …, 2023		2023
Journey into the unknown: graph and machine learning based approaches for improved characterization of novel pathogens. A Balaji		2023
Methods developed during the first National Center for Biotechnology Information Structural Variation Codeathon at Baylor College of Medicine M Mahmoud, AR Gener, MM Khayat, AC English, A Balaji, A Zhou, ... F1000Research 9 (1141), 1141, 2020		2020

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