| SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network J Hu, X Li, K Coleman, A Schroeder, N Ma, DJ Irwin, EB Lee, ... Nature methods 18 (11), 1342-1351, 2021 | 334 | 2021 |
| Iterative transfer learning with neural network for clustering and cell type classification in single-cell RNA-seq analysis J Hu, X Li, G Hu, Y Lyu, K Susztak, M Li Nature machine intelligence 2 (10), 607-618, 2020 | 93 | 2020 |
| Pan-cancer T cell atlas links a cellular stress response state to immunotherapy resistance Y Chu, E Dai, Y Li, G Han, G Pei, DR Ingram, K Thakkar, JJ Qin, M Dang, ... Nature medicine 29 (6), 1550-1562, 2023 | 65 | 2023 |
| ASEP: Gene-based detection of allele-specific expression across individuals in a population by RNA sequencing J Fan, J Hu, C Xue, H Zhang, K Susztak, MP Reilly, R Xiao, M Li PLoS genetics 16 (5), e1008786, 2020 | 56 | 2020 |
| Thymic stromal lymphopoietin induces adipose loss through sebum hypersecretion R Choa, J Tohyama, S Wada, H Meng, J Hu, M Okumura, RM May, ... Science 373 (6554), eabd2893, 2021 | 48 | 2021 |
| Statistical and machine learning methods for spatially resolved transcriptomics with histology J Hu, A Schroeder, K Coleman, C Chen, BJ Auerbach, M Li Computational and structural biotechnology journal 19, 3829-3841, 2021 | 48 | 2021 |
| Adaptive behavior and different thermal experiences of real people: A Bayesian neural network approach to thermal preference prediction and classification N Ma, L Chen, J Hu, P Perdikaris, WW Braham Building and Environment 198, 107875, 2021 | 45 | 2021 |
| The single-cell immunogenomic landscape of B and plasma cells in early-stage lung adenocarcinoma D Hao, G Han, A Sinjab, LI Gomez-Bolanos, R Lazcano, A Serrano, ... Cancer discovery 12 (11), 2626-2645, 2022 | 37 | 2022 |
| Implication of specific retinal cell-type involvement and gene expression changes in AMD progression using integrative analysis of single-cell and bulk RNA-seq profiling Y Lyu, R Zauhar, N Dana, CE Strang, J Hu, K Wang, S Liu, N Pan, ... Scientific Reports 11 (1), 15612, 2021 | 28 | 2021 |
| As in real estate, location matters: cellular expression of complement varies between macular and peripheral regions of the retina and supporting tissues R Zauhar, J Biber, Y Jabri, M Kim, J Hu, L Kaplan, AM Pfaller, N Schäfer, ... Frontiers in immunology 13, 895519, 2022 | 20 | 2022 |
| Using machine learning to identify metabolomic signatures of pediatric chronic kidney disease etiology AM Lee, J Hu, Y Xu, AG Abraham, R Xiao, J Coresh, C Rebholz, J Chen, ... Journal of the American Society of Nephrology 33 (2), 375-386, 2022 | 20 | 2022 |
| Deciphering tumor ecosystems at super resolution from spatial transcriptomics with TESLA J Hu, K Coleman, D Zhang, EB Lee, H Kadara, L Wang, M Li Cell systems 14 (5), 404-417. e4, 2023 | 19 | 2023 |
| Downregulated cytotoxic CD8+ T-cell identifies with the NKG2A-soluble HLA-E axis as a predictive biomarker and potential therapeutic target in keloids H Xu, Z Zhu, J Hu, J Sun, Y Wo, X Wang, H Zou, B Li, Y Zhang Cellular & Molecular Immunology 19 (4), 527-539, 2022 | 17 | 2022 |
| PennDiff: detecting differential alternative splicing and transcription by RNA sequencing Y Hu, J Lin, J Hu, G Hu, K Wang, H Zhang, MP Reilly, M Li Bioinformatics 34 (14), 2384-2391, 2018 | 14 | 2018 |
| Applications of single-cell genomics and computational strategies to study common disease and population-level variation BJ Auerbach, J Hu, MP Reilly, M Li Genome Research 31 (10), 1728-1741, 2021 | 13 | 2021 |
| Leveraging spatial transcriptomics data to recover cell locations in single-cell RNA-seq with CeLEry Q Zhang, S Jiang, A Schroeder, J Hu, K Li, B Zhang, D Dai, EB Lee, ... Nature communications 14 (1), 4050, 2023 | 10 | 2023 |
| Physical activity during and after breast cancer therapy and associations of baseline physical activity with changes in cardiac function by echocardiography JN Upshaw, RA Hubbard, J Hu, JC Brown, AM Smith, B Demissei, ... Cancer medicine 9 (17), 6122-6131, 2020 | 9 | 2020 |
| Inferring super-resolution tissue architecture by integrating spatial transcriptomics with histology D Zhang, A Schroeder, H Yan, H Yang, J Hu, MYY Lee, KS Cho, ... Nature Biotechnology, 1-6, 2024 | 8 | 2024 |
| SpaDecon: cell-type deconvolution in spatial transcriptomics with semi-supervised learning K Coleman, J Hu, A Schroeder, EB Lee, M Li Communications Biology 6 (1), 378, 2023 | 8 | 2023 |
| Machine learning models to predict electroencephalographic seizures in critically ill children J Hu, FW Fung, M Jacobwitz, DS Parikh, L Vala, M Donnelly, AA Topjian, ... Seizure 87, 61-68, 2021 | 8 | 2021 |
Mingyao LiProfessor of Biostatistics, University of Pennsylvania School of MedicineVerified email at mail.med.upenn.edu
