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Rui CHANG
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Atheroprotective roles of smooth muscle cell phenotypic modulation and the TCF21 disease gene as revealed by single-cell analysis
QT Wirka RC, Wagh D, Paik DT, Pjanic M, Nguyen T, Miller CL, Kundu R, Nagao ...
Nature Medicine, 2019
5522019
Metabolic network failures in Alzheimer's disease: A biochemical road map
JB Toledo, M Arnold, G Kastenmüller, R Chang, RA Baillie, X Han, ...
Alzheimer's & Dementia 13 (9), 965-984, 2017
3932017
Analysis of transcriptional variability in a large human iPSC library reveals genetic and non-genetic determinants of heterogeneity
I Carcamo-Orive, GE Hoffman, P Cundiff, ND Beckmann, SL D’Souza, ...
Cell stem cell 20 (4), 518-532. e9, 2017
2362017
Sex and APOE ε4 genotype modify the Alzheimer’s disease serum metabolome
M Arnold, K Nho, A Kueider-Paisley, T Massaro, K Huynh, B Brauner, ...
Nature communications 11 (1), 1148, 2020
1262020
Metabolic network analysis reveals altered bile acid synthesis and metabolism in Alzheimer’s disease
P Baloni, CC Funk, J Yan, JT Yurkovich, A Kueider-Paisley, K Nho, ...
Cell Reports Medicine 1 (8), 2020
1172020
Systematic search for recipes to generate induced pluripotent stem cells
R Chang, R Shoemaker, W Wang
PLoS computational biology 7 (12), e1002300, 2011
722011
Elevated rates of transaminitis during ipilimumab therapy for metastatic melanoma
SG Bernardo, M Moskalenko, M Pan, S Shah, HK Sidhu, S Sicular, ...
Melanoma research 23 (1), 47-54, 2013
662013
Dissection of immune gene networks in primary melanoma tumors critical for antitumor surveillance of patients with stage II–III resectable disease
S Sivendran, R Chang, L Pham, RG Phelps, ST Harcharik, LD Hall, ...
Journal of Investigative Dermatology 134 (8), 2202-2211, 2014
612014
Divergent brain gene expression patterns associate with distinct cell-specific tau neuropathology traits in progressive supranuclear palsy
Acta Neuropathologica 136 (5), 709–727, 2018
512018
A novel knowledge-driven systems biology approach for phenotype prediction upon genetic intervention
R Chang, R Shoemaker, W Wang
IEEE/ACM Transactions on Computational Biology and Bioinformatics 8 (5 …, 2011
502011
The human brainome: network analysis identifies HSPA2 as a novel Alzheimer’s disease target
VA Petyuk, R Chang, M Ramirez-Restrepo, ND Beckmann, MYR Henrion, ...
Brain 141 (9), 2721-2739, 2018
382018
Modeling semantics of inconsistent qualitative knowledge for quantitative Bayesian network inference
R Chang, W Brauer, M Stetter
Neural Networks 21 (2-3), 182-192, 2008
352008
Novel algorithm for Bayesian network parameter learning with informative prior constraints
R Chang, W Wang
The 2010 international joint conference on neural networks (IJCNN), 1-8, 2010
312010
Culture shock: microglial heterogeneity, activation, and disrupted single-cell microglial networks in vitro
MP Cadiz, TD Jensen, JP Sens, K Zhu, WM Song, B Zhang, M Ebbert, ...
Molecular Neurodegeneration 17 (1), 26, 2022
302022
Quantitative inference by qualitative semantic knowledge mining with Bayesian model averaging
R Chang, M Stetter, W Brauer
IEEE transactions on knowledge and data engineering 20 (12), 1587-1600, 2008
302008
Immune biomarkers are more accurate in prediction of survival in ulcerated than in non-ulcerated primary melanomas
EH de Moll, Y Fu, Y Qian, SH Perkins, S Wieder, S Gnjatic, R Remark, ...
Cancer Immunology, Immunotherapy 64, 1193-1203, 2015
272015
Automated digital TIL analysis (ADTA) adds prognostic value to standard assessment of depth and ulceration in primary melanoma
MR Moore, ID Friesner, EM Rizk, BT Fullerton, M Mondal, MH Trager, ...
Scientific reports 11 (1), 2809, 2021
222021
Exploring the reproducibility of probabilistic causal molecular network models
A Cohain, AA Divaraniya, K Zhu, JR Scarpa, A Kasarskis, J Zhu, R Chang, ...
PSB, 120-131, 2017
212017
Causal inference in biology networks with integrated belief propagation
R Chang, JR Karr, EE Schadt
Pacific Symposium on Biocomputing Co-Chairs, 359-370, 2014
212014
Linking transcriptomic and imaging data defines features of a favorable tumor immune microenvironment and identifies a combination biomarker for primary melanoma
RD Gartrell-Corrado, AX Chen, EM Rizk, DK Marks, MH Bogardus, ...
Cancer research 80 (5), 1078-1087, 2020
202020
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Articles 1–20