Lukas Käll
Lukas Käll
Professor, KTH Royal Institute of Technology, Science for Life Laboratory
Verified email at kth.se - Homepage
Title
Cited by
Cited by
Year
A combined transmembrane topology and signal peptide prediction method
L Käll, A Krogh, ELL Sonnhammer
Journal of molecular biology 338 (5), 1027-1036, 2004
21332004
Semi-supervised learning for peptide identification from shotgun proteomics datasets
L Käll, JD Canterbury, J Weston, WS Noble, MJ MacCoss
Nature methods 4 (11), 923-925, 2007
15802007
Advantages of combined transmembrane topology and signal peptide prediction—the Phobius web server
L Käll, A Krogh, ELL Sonnhammer
Nucleic acids research 35 (suppl_2), W429-W432, 2007
12442007
Assigning significance to peptides identified by tandem mass spectrometry using decoy databases
L Käll, JD Storey, MJ MacCoss, WS Noble
Journal of proteome research 7 (01), 29-34, 2008
6312008
The TOPCONS web server for consensus prediction of membrane protein topology and signal peptides
KD Tsirigos, C Peters, N Shu, L Käll, A Elofsson
Nucleic acids research 43 (W1), W401-W407, 2015
5372015
An HMM posterior decoder for sequence feature prediction that includes homology information
L Käll, A Krogh, ELL Sonnhammer
Bioinformatics 21 (suppl_1), i251-i257, 2005
3182005
Posterior error probabilities and false discovery rates: two sides of the same coin
L Käll, JD Storey, MJ MacCoss, WS Noble
Journal of proteome research 7 (01), 40-44, 2008
2952008
Gene‐specific correlation of RNA and protein levels in human cells and tissues
F Edfors, F Danielsson, BM Hallström, L Käll, E Lundberg, F Pontén, ...
Molecular systems biology 12 (10), 883, 2016
2882016
Improvements to the percolator algorithm for peptide identification from shotgun proteomics data sets
M Spivak, J Weston, L Bottou, L Kall, WS Noble
Journal of proteome research 8 (7), 3737-3745, 2009
2472009
Transmembrane topology and signal peptide prediction using dynamic bayesian networks
SM Reynolds, L Käll, ME Riffle, JA Bilmes, WS Noble
PLoS computational biology 4 (11), e1000213, 2008
2402008
Membrane topology of the Drosophila OR83b odorant receptor
C Lundin, L Käll, SA Kreher, K Kapp, EL Sonnhammer, JR Carlson, ...
FEBS letters 581 (29), 5601-5604, 2007
2212007
HiRIEF LC-MS enables deep proteome coverage and unbiased proteogenomics
RMM Branca, LM Orre, HJ Johansson, V Granholm, M Huss, ...
Nature methods 11 (1), 59-62, 2014
2082014
A general model of G protein‐coupled receptor sequences and its application to detect remote homologs
M Wistrand, L Käll, ELL Sonnhammer
Protein science 15 (3), 509-521, 2006
1942006
Rapid and accurate peptide identification from tandem mass spectra
CY Park, AA Klammer, L Kall, MJ MacCoss, WS Noble
Journal of proteome research 7 (7), 3022-3027, 2008
1882008
Non-parametric estimation of posterior error probabilities associated with peptides identified by tandem mass spectrometry
L Käll, JD Storey, WS Noble
Bioinformatics 24 (16), i42-i48, 2008
1272008
Peptide-centric proteome analysis: an alternative strategy for the analysis of tandem mass spectrometry data
YS Ting, JD Egertson, SH Payne, S Kim, B MacLean, L Käll, R Aebersold, ...
Molecular & Cellular Proteomics 14 (9), 2301-2307, 2015
1182015
Crux: rapid open source protein tandem mass spectrometry analysis
S McIlwain, K Tamura, A Kertesz-Farkas, CE Grant, B Diament, B Frewen, ...
Journal of proteome research 13 (10), 4488-4491, 2014
1062014
Use of shotgun proteomics for the identification, confirmation, and correction of C. elegans gene annotations
GE Merrihew, C Davis, B Ewing, G Williams, L Käll, BE Frewen, WS Noble, ...
Genome research 18 (10), 1660-1669, 2008
1022008
Multi-omic data analysis using Galaxy
J Boekel, JM Chilton, IR Cooke, PL Horvatovich, PD Jagtap, L Käll, ...
Nature biotechnology 33 (2), 137-139, 2015
1012015
Fast and accurate protein false discovery rates on large-scale proteomics data sets with Percolator 3.0
M The, MJ MacCoss, WS Noble, L Käll
J. Am. Soc. Mass Spectrom 27 (11), 1719, 2016
992016
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Articles 1–20