Pierre-Alain Chaumeil
Pierre-Alain Chaumeil
Bioinformatician, University of Queensland
Verified email at
Cited by
Cited by
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database
PA Chaumeil, AJ Mussig, P Hugenholtz, DH Parks
Bioinformatics, 2019
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
DH Parks, M Chuvochina, DW Waite, C Rinke, A Skarshewski, ...
Nature biotechnology, 2018
Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
DH Parks, C Rinke, M Chuvochina, PA Chaumeil, BJ Woodcroft, ...
Nature microbiology 2 (11), 1533-1542, 2017
A complete domain-to-species taxonomy for Bacteria and Archaea
DH Parks, M Chuvochina, PA Chaumeil, C Rinke, AJ Mussig, ...
Nature biotechnology 38 (9), 1079-1086, 2020
GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy
DH Parks, M Chuvochina, C Rinke, AJ Mussig, PA Chaumeil, ...
Nucleic acids research 50 (D1), D785-D794, 2022
GTDB-Tk v2: memory friendly classification with the genome taxonomy database
PA Chaumeil, AJ Mussig, P Hugenholtz, DH Parks
Bioinformatics 38 (23), 5315-5316, 2022
A standardized archaeal taxonomy for the Genome Taxonomy Database
C Rinke, M Chuvochina, AJ Mussig, PA Chaumeil, AA Davín, DW Waite, ...
Nature Microbiology 6 (7), 946-959, 2021
ArachnoServer 2.0, an updated online resource for spider toxin sequences and structures
V Herzig, DLA Wood, F Newell, PA Chaumeil, Q Kaas, GJ Binford, ...
Nucleic acids research 39 (suppl_1), D653-D657, 2010
ArachnoServer 3.0: an online resource for automated discovery, analysis and annotation of spider toxins
SS Pineda, PA Chaumeil, A Kunert, Q Kaas, MWC Thang, L Le, M Nuhn, ...
Bioinformatics 34 (6), 1074-1076, 2018
Evaluation of a concatenated protein phylogeny for classification of tailed double-stranded DNA viruses belonging to the order Caudovirales
SJ Low, M Džunková, PA Chaumeil, DH Parks, P Hugenholtz
Nature microbiology 4 (8), 1306-1315, 2019
Proposal of names for 328 higher rank taxa defined in the Genome Taxonomy Database under two prokaryotic codes
M Chuvochina, AJ Mussig, PA Chaumeil, A Skarshewski, C Rinke, ...
Genome Taxonomy Database and SeqCode: Microbial taxonomy and nomenclature in the age of big sequence data
M Chuvochina, C Rinke, A Mussig, PA Chaumeil, D Parks, P Hugenholtz
Biodiversity Information Science and Standards 7, e111135, 2023
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