| A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life DH Parks, M Chuvochina, DW Waite, C Rinke, A Skarshewski, ... Nature biotechnology, 2018 | 545 | 2018 |
| Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life DH Parks, C Rinke, M Chuvochina, PA Chaumeil, BJ Woodcroft, ... Nature microbiology 2 (11), 1533-1542, 2017 | 443 | 2017 |
| ArachnoServer 2.0, an updated online resource for spider toxin sequences and structures V Herzig, DLA Wood, F Newell, PA Chaumeil, Q Kaas, GJ Binford, ... Nucleic acids research 39 (suppl_1), D653-D657, 2010 | 161 | 2010 |
| GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database PA Chaumeil, AJ Mussig, P Hugenholtz, DH Parks Bioinformatics, 2019 | 51 | 2019 |
| ArachnoServer 3.0: an online resource for automated discovery, analysis and annotation of spider toxins SS Pineda, PA Chaumeil, A Kunert, Q Kaas, MWC Thang, L Le, M Nuhn, ... Bioinformatics 34 (6), 1074-1076, 2018 | 38 | 2018 |
| Evaluation of a concatenated protein phylogeny for classification of tailed double-stranded DNA viruses belonging to the order Caudovirales SJ Low, M Džunková, PA Chaumeil, DH Parks, P Hugenholtz Nature microbiology 4 (8), 1306-1315, 2019 | 11 | 2019 |
| Selection of representative genomes for 24,706 bacterial and archaeal species clusters provide a complete genome-based taxonomy DH Parks, M Chuvochina, PA Chaumeil, C Rinke, AJ Mussig, ... BioRxiv, 771964, 2019 | 10 | 2019 |
| A complete domain-to-species taxonomy for Bacteria and Archaea DH Parks, M Chuvochina, PA Chaumeil, C Rinke, AJ Mussig, ... Nature Biotechnology, 1-8, 2020 | | 2020 |
| A rank-normalized archaeal taxonomy based on genome phylogeny resolves widespread incomplete and uneven classifications C Rinke, M Chuvochina, AJ Mussig, PA Chaumeil, DW Waite, ... bioRxiv, 2020 | | 2020 |
Philip HugenholtzAustralian Centre for Ecogenomics, SCMB, The University of QueenslandVerified email at uq.edu.au
