| Whole microbial community viability is not quantitatively reflected by propidium monoazide sequencing approach Y Wang, Y Yan, KN Thompson, S Bae, EK Accorsi, Y Zhang, J Shen, ... Microbiome 9 (1), 1-13, 2021 | 46 | 2021 |
| Improved PCR primers to amplify 16S rRNA genes from NC10 bacteria Z He, J Wang, J Hu, H Zhang, C Cai, J Shen, X Xu, P Zheng, B Hu Applied microbiology and biotechnology 100, 5099-5108, 2016 | 39 | 2016 |
| From one species to another: A review on the interaction between chemistry and microbiology in relation to cleaning in the built environment S Velazquez, W Griffiths, L Dietz, P Horve, S Nunez, J Hu, J Shen, M Fretz, ... Indoor air 29 (6), 880-894, 2019 | 24 | 2019 |
| Toward accurate and robust environmental surveillance using metagenomics J Shen, AG McFarland, VB Young, MK Hayden, EM Hartmann Frontiers in Genetics 12, 151, 2021 | 17 | 2021 |
| RNA-based amplicon sequencing is ineffective in measuring metabolic activity in environmental microbial communities Y Wang, KN Thompson, Y Yan, MI Short, Y Zhang, EA Franzosa, J Shen, ... Microbiome 11 (1), 1-15, 2023 | 14 | 2023 |
| Potencial correlated environmental factors leading to the niche segregation of ammonia-oxidizing archaea and ammonia-oxidizing bacteria: A review S Liu, JJ Hu, JX Shen, S Chen, GM Tian, P Zheng, LP Lou, F Ma, BL Hu Applied Environmental Biotechnology 2 (2), 11-19, 2017 | 13 | 2017 |
| Contrasting biomass, dynamics and diversity of microbial community following the air-drying and rewetting of an upland and a paddy soil of the same type Q Shen, K Zhang, J Song, J Shen, J Xu, K Inubushi, PC Brookes Biology and Fertility of Soils 54, 871-875, 2018 | 12 | 2018 |
| Triclosan tolerance is driven by a conserved mechanism in diverse Pseudomonas species AG McFarland, HK Bertucci, E Littman, J Shen, C Huttenhower, ... Applied and Environmental Microbiology, 2021 | 9 | 2021 |
| An improved workflow for accurate and robust healthcare environmental surveillance using metagenomics J Shen, AG McFarland, RA Blaustein, LJ Rose, KA Perry-Dow, ... Microbiome 10 (1), 1-18, 2022 | 4 | 2022 |
| Characterizing microbial community viability with RNA-based high-throughput sequencing Y Wang, KN Thompson, Y Yan, MI Short, Y Zhang, EA Franzosa, J Shen, ... | 2 | 2022 |
| Individual target pharmacokinetic/pharmacodynamic attainment rates among meropenem-treated patients admitted to the ICU with hospital-acquired pneumonia R Rohani, MH Scheetz, HK Donnelly, A Donayre, M Kang, E Diaz, ... Journal of Antimicrobial Chemotherapy, 2022 | 1 | 2022 |
| DNA extraction protocol for low-biomass environmental samples: adapted from the Lucigen MasterPure Complete DNA and RNA Purification Kit manual J Shen, EM Hartmann | 1 | 2022 |
| Snap freezing of environmental microbial samples in liquid J Shen, EM Hartmann | 1 | 2022 |
| Collect, extract, pool, and cultivate surface swab samples from built environments J Shen, EM Hartmann | 1 | 2022 |
| An optimized protocol for propidium monoazide treatment J Shen, LJ Rose, KA Perry-Dow, EM Hartmann | 1 | 2022 |
| Advancing Understanding of Diversity and Antimicrobial Resistance in Indoor Microbiomes J Shen Northwestern University, 2023 | | 2023 |
| RefDeduR: A text-normalization and decision-tree aided R package enabling accurate and high-throughput reference deduplication for large datasets J Shen, F Ling, EM Hartmann bioRxiv, 2022.09. 29.510210, 2022 | | 2022 |
| Blind Spots in Methods Based on Cultivation and Metagenomic Sequencing for Surface Microbiomes in a Medical Intensive Care Unit J Shen, A McFarland, R Blaustein, M Hayden, V Young, E Hartmann Infection Control & Hospital Epidemiology 41 (S1), s141-s142, 2020 | | 2020 |
Erica M. HartmannNorthwestern UniversityVerified email at northwestern.edu
