Chen Li
Chen Li
Australian NHMRC CJ Martin Research Fellow, ETH Zurich, Monash University
Verified email at monash.edu - Homepage
TitleCited byYear
GlycoMine: a machine learning-based approach for predicting N-, C-and O-linked glycosylation in the human proteome
F Li, C Li, M Wang, GI Webb, Y Zhang, JC Whisstock, J Song
Bioinformatics 31 (9), 1411-1419, 2015
732015
OcVFDT: one-class very fast decision tree for one-class classification of data streams
C Li, Y Zhang, X Li
Proceedings of the Third International Workshop on Knowledge Discovery from …, 2009
562009
Quokka: a comprehensive tool for rapid and accurate prediction of kinase family-specific phosphorylation sites in the human proteome
F Li, C Li, TT Marquez-Lago, A Leier, T Akutsu, AW Purcell, AI Smith, ...
Bioinformatics 1, 9, 2018
482018
GlycoMinestruct: a new bioinformatics tool for highly accurate mapping of the human N-linked and O-linked glycoproteomes by incorporating structural features
F Li, C Li, J Revote, Y Zhang, GI Webb, J Li, J Song, T Lithgow
Scientific reports 6, 34595, 2016
262016
A subset of HLA-I peptides are not genomically templated: Evidence for cis-and trans-spliced peptide ligands
P Faridi, C Li, SH Ramarathinam, JP Vivian, PT Illing, NA Mifsud, R Ayala, ...
Science immunology 3 (28), eaar3947, 2018
232018
Comprehensive assessment and performance improvement of effector protein predictors for bacterial secretion systems III, IV and VI
Y An, J Wang, C Li, A Leier, T Marquez-Lago, J Wilksch, Y Zhang, ...
Briefings in bioinformatics 19 (1), 148-161, 2016
232016
Large-scale comparative assessment of computational predictors for lysine post-translational modification sites
Z Chen, X Liu, F Li, C Li, T Marquez-Lago, A Leier, T Akutsu, GI Webb, ...
Brief Bioinform 30285084, 2018
212018
Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods
F Li, Y Wang, C Li, TT Marquez-Lago, A Leier, ND Rawlings, G Haffari, ...
Briefings in bioinformatics, bby077, 2018
172018
SPAR: a random forest-based predictor for self-interacting proteins with fine-grained domain information
X Liu, S Yang, C Li, Z Zhang, J Song
Amino acids 48 (7), 1655-1665, 2016
162016
SecretEPDB: a comprehensive web-based resource for secreted effector proteins of the bacterial types III, IV and VI secretion systems
Y An, J Wang, C Li, J Revote, Y Zhang, T Naderer, M Hayashida, T Akutsu, ...
Scientific reports 7, 41031, 2017
152017
The α-importome of mammalian germ cell maturation provides novel insights for importin biology
A Arjomand, MA Baker, C Li, AM Buckle, DA Jans, KL Loveland, ...
The FASEB Journal 28 (8), 3480-3493, 2014
152014
Learning from data streams with only positive and unlabeled data
X Qin, Y Zhang, C Li, X Li
Journal of Intelligent Information Systems 40 (3), 405-430, 2013
142013
Computational characterization of parallel dimeric and trimeric coiled-coils using effective amino acid indices
C Li, XF Wang, Z Chen, Z Zhang, J Song
Molecular BioSystems 11 (2), 354-360, 2015
132015
Knowledge-transfer learning for prediction of matrix metalloprotease substrate-cleavage sites
Y Wang, J Song, TT Marquez-Lago, A Leier, C Li, T Lithgow, GI Webb, ...
Scientific reports 7 (1), 5755, 2017
102017
Critical evaluation of in silico methods for prediction of coiled-coil domains in proteins
C Li, C Ching Han Chang, J Nagel, BT Porebski, M Hayashida, T Akutsu, ...
Briefings in bioinformatics 17 (2), 270-282, 2016
92016
Bagging one-class decision trees
C Li, Y Zhang
2008 Fifth International Conference on Fuzzy Systems and Knowledge Discovery …, 2008
92008
Positive-unlabelled learning of glycosylation sites in the human proteome
F Li, Y Zhang, AW Purcell, GI Webb, KC Chou, T Lithgow, C Li, J Song
BMC Bioinformatics 20 (1), 112, 2019
82019
Periscope: quantitative prediction of soluble protein expression in the periplasm of Escherichia coli
CCH Chang, C Li, GI Webb, BT Tey, J Song, RN Ramanan
Scientific reports 6, 21844, 2016
82016
Comparative analysis of phosphoethanolamine transferases involved in polymyxin resistance across 10 clinically relevant Gram-negative bacteria
J Huang, Y Zhu, ML Han, M Li, J Song, T Velkov, C Li, J Li
International journal of antimicrobial agents 51 (4), 586-593, 2018
32018
PAnDE: Averaged n-Dependence Estimators for Positive Unlabeled Learning
F Li, J Song, C Li, T Akutsu, Y Zhang
ICIC Express Letter, Part B: Applications 8 (9), 1287-1297, 2017
32017
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Articles 1–20