Philippe Thomas
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A comprehensive benchmark of kernel methods to extract protein–protein interactions from literature
D Tikk, P Thomas, P Palaga, J Hakenberg, U Leser
PLoS computational biology 6 (7), e1000837, 2010
Ras-mediated deregulation of the circadian clock in cancer
A Relogio, P Thomas, P Medina-Perez, S Reischl, S Bervoets, E Gloc, ...
PLoS genetics 10 (5), e1004338, 2014
BioCreative III interactive task: an overview
C Arighi, P Roberts, S Agarwal, S Bhattacharya, G Cesareni, ...
BMC Bioinformatics 12 (Suppl 8), S4, 2011
GeneView: a comprehensive semantic search engine for PubMed
P Thomas, J Starlinger, A Vowinkel, S Arzt, U Leser
Nucleic acids research 40 (W1), W585-W591, 2012
Relation Extraction for Drug-Drug Interactions using Ensemble Learning
P Thomas, M Neves, I Solt, D Tikk, U Leser
DDIExtraction2011: First Challenge Task: Drug-Drug Interaction Extraction at …, 2011
WBI-DDI: Drug-Drug Interaction Extraction using Majority Voting
P Thomas, M Neves, T Rocktäschel, U Leser, U den Linden
SemEval, 2013
Challenges in the association of human single nucleotide polymorphism mentions with unique database identifiers
P Thomas, R Klinger, L Furlong, M Hofmann-Apitius, C Friedrich
BMC Bioinformatics 12 (Suppl 4), S4, 2011
A detailed error analysis of 13 kernel methods for protein-protein interaction extraction
D Tikk, I Solt, P Thomas, U Leser
BMC bioinformatics 14 (1), 1-20, 2013
SETH detects and normalizes genetic variants in text
P Thomas, T Rocktäschel, J Hakenberg, Y Lichtblau, U Leser
Bioinformatics 32 (18), 2883-2885, 2016
Improving Distantly Supervised Extraction of Drug-Drug and Protein-Protein Interactions
T Bobic, R Klinger, P Thomas, M Hofmann-Apitius, S Birlinghoven, ...
ROBUS-UNSUP 2012: Joint Workshop on Unsupervised and Semi-Supervised …, 2012
Findings of the wmt 2017 biomedical translation shared task
AJ Yepes, A Névéol, M Neves, K Verspoor, O Bojar, A Boyer, C Grozea, ...
Proceedings of the Second Conference on Machine Translation, 234-247, 2017
Assembly of a comprehensive regulatory network for the mammalian circadian clock: a bioinformatics approach
R Lehmann, L Childs, P Thomas, M Abreu, L Fuhr, H Herzel, U Leser, ...
PloS one 10 (5), e0126283, 2015
Not all links are equal: exploiting dependency types for the extraction of protein-protein interactions from text
P Thomas, S Pietschmann, I Solt, D Tikk, U Leser
BioNLP 2011 Workshop, 2011, 1, 2011
Classical Hodgkin lymphoma shows epigenetic features of an abortive plasma cellular differentiation
V Seitz, PE Thomas, K Zimmermann, U Paul, A Ehlers, M Joosten, ...
Haematologica, haematol. 2010.031138 v1, 2011
Integrating 400 million variants from 80,000 human samples with extensive annotations: towards a knowledge base to analyze disease cohorts
J Hakenberg, WY Cheng, P Thomas, YC Wang, AV Uzilov, R Chen
BMC bioinformatics 17 (1), 1-13, 2016
Learning protein–protein interaction extraction using distant supervision
P Thomas, I Solt, R Klinger, U Leser
Proceedings of Workshop on Robust Unsupervised and Semisupervised Methods in …, 2011
Computer-assisted curation of a human regulatory core network from the biological literature
P Thomas, P Durek, I Solt, B Klinger, F Witzel, P Schulthess, Y Mayer, ...
Bioinformatics 31 (8), 1258-1266, 2015
Weakly Labeled Corpora as Silver Standard for Drug-Drug and Protein-Protein Interaction
P Thomas, T Bobic, M Hofmann-Apitius, U Leser, R Klinger
Third Workshop on Building and Evaluating Resources for Biomedical Text …, 2012
Extended feature set for chemical named entity recognition and indexing
T Huber, T Rocktäschel, M Weidlich, P Thomas, U Leser
BioCreative Challenge Evaluation Workshop 2, 88, 2013
Clickbait identification using neural networks
P Thomas
arXiv preprint arXiv:1710.08721, 2017
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