Eshel Faraggi
Eshel Faraggi
Adjunct Professor, Physics, IUPUI; Physicist, Research and Information Systems; Consultant, Battelle
Verified email at iupui.edu - Homepage
Title
Cited by
Cited by
Year
Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and …
Y Yang, E Faraggi, H Zhao, Y Zhou
Bioinformatics 27 (15), 2076-2082, 2011
3112011
SPINE X: improving protein secondary structure prediction by multistep learning coupled with prediction of solvent accessible surface area and backbone torsion angles
E Faraggi, T Zhang, Y Yang, L Kurgan, Y Zhou
Journal of computational chemistry 33 (3), 259-267, 2012
2442012
SPINE-D: accurate prediction of short and long disordered regions by a single neural-network based method
T Zhang, E Faraggi, B Xue, AK Dunker, VN Uversky, Y Zhou
Journal of Biomolecular Structure and Dynamics 29 (4), 799-813, 2012
1602012
Improving the prediction accuracy of residue solvent accessibility and real‐value backbone torsion angles of proteins by guided‐learning through a two‐layer neural network
E Faraggi, B Xue, Y Zhou
Proteins: Structure, Function, and Bioinformatics 74 (4), 847-856, 2009
1382009
Predicting continuous local structure and the effect of its substitution for secondary structure in fragment-free protein structure prediction
E Faraggi, Y Yang, S Zhang, Y Zhou
Structure 17 (11), 1515-1527, 2009
1342009
BEST: improved prediction of B-cell epitopes from antigen sequences
J Gao, E Faraggi, Y Zhou, J Ruan, L Kurgan
PloS one 7 (6), e40104, 2012
822012
Real‐value prediction of backbone torsion angles
B Xue, O Dor, E Faraggi, Y Zhou
Proteins: Structure, Function, and Bioinformatics 72 (1), 427-433, 2008
762008
Predicting residue–residue contact maps by a two‐layer, integrated neural‐network method
B Xue, E Faraggi, Y Zhou
Proteins: Structure, Function, and Bioinformatics 76 (1), 176-183, 2009
542009
Intrinsically semi-disordered state and its role in induced folding and protein aggregation
T Zhang, E Faraggi, Z Li, Y Zhou
Cell biochemistry and biophysics 67 (3), 1193-1205, 2013
502013
Trends in template/fragment-free protein structure prediction
Y Zhou, Y Duan, Y Yang, E Faraggi, H Lei
Theoretical chemistry accounts 128 (1), 3-16, 2011
452011
Magnetic energy loss in permalloy thin films and microstructures
C Nistor, E Faraggi, JL Erskine
Physical Review B 72 (1), 014404, 2005
372005
Accurate single‐sequence prediction of solvent accessible surface area using local and global features
E Faraggi, Y Zhou, A Kloczkowski
Proteins: Structure, Function, and Bioinformatics 82 (11), 3170-3176, 2014
352014
Fluctuations of backbone torsion angles obtained from NMR‐determined structures and their prediction
T Zhang, E Faraggi, Y Zhou
Proteins: Structure, Function, and Bioinformatics 78 (16), 3353-3362, 2010
342010
The GOR method of protein secondary structure prediction and its application as a protein aggregation prediction tool
M Kouza, E Faraggi, A Kolinski, A Kloczkowski
Prediction of Protein Secondary Structure, 7-24, 2017
322017
Direct prediction of profiles of sequences compatible with a protein structure by neural networks with fragment‐based local and energy‐based nonlocal profiles
Z Li, Y Yang, E Faraggi, J Zhan, Y Zhou
Proteins: Structure, Function, and Bioinformatics 82 (10), 2565-2573, 2014
272014
Biophysical effects of pulsed lasers in the retina and other tissues containing strongly absorbing particles: shockwave and explosive bubble generation
E Faraggi, BS Gerstman, J Sun
Journal of biomedical optics 10 (6), 064029, 2005
272005
A global machine learning based scoring function for protein structure prediction
E Faraggi, A Kloczkowski
Proteins: Structure, Function, and Bioinformatics 82 (5), 752-759, 2014
262014
Stress confinement, shock wave formation, and laser-induced damage
E Faraggi, S Wang, B Gerstman
Optical Interactions with Tissue and Cells XVI 5695, 209-215, 2005
232005
An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12
C Keasar, LJ McGuffin, B Wallner, G Chopra, B Adhikari, D Bhattacharya, ...
Scientific reports 8 (1), 1-18, 2018
182018
Prediction of protein secondary structure
Y Zhou, A Kloczkowski, E Faraggi, Y Yang
Humana Press, 2017
122017
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Articles 1–20