| Off-season RSV epidemics in Australia after easing of COVID-19 restrictions JS Eden, C Sikazwe, R Xie, YM Deng, SG Sullivan, A Michie, A Levy, ... Nature Communications 13 (1), 2884, 2022 | 174 | 2022 |
| Human seasonal influenza under COVID-19 and the potential consequences of influenza lineage elimination V Dhanasekaran, S Sullivan, KM Edwards, R Xie, A Khvorov, ... Nature communications 13 (1), 1721, 2022 | 130 | 2022 |
| Computational analysis and prediction of lysine malonylation sites by exploiting informative features in an integrative machine-learning framework Y Zhang, R Xie, J Wang, A Leier, TT Marquez-Lago, T Akutsu, GI Webb, ... Briefings in bioinformatics 20 (6), 2185-2199, 2019 | 99 | 2019 |
| Bastion3: a two-layer ensemble predictor of type III secreted effectors J Wang, J Li, B Yang, R Xie, TT Marquez-Lago, A Leier, M Hayashida, ... Bioinformatics 35 (12), 2017-2028, 2019 | 79 | 2019 |
| DeepVF: a deep learning-based hybrid framework for identifying virulence factors using the stacking strategy R Xie, J Li, J Wang, W Dai, A Leier, TT Marquez-Lago, T Akutsu, ... Briefings in bioinformatics 22 (3), bbaa125, 2021 | 49 | 2021 |
| PeNGaRoo, a combined gradient boosting and ensemble learning framework for predicting non-classical secreted proteins Y Zhang, S Yu, R Xie, J Li, A Leier, TT Marquez-Lago, T Akutsu, AI Smith, ... Bioinformatics 36 (3), 704-712, 2020 | 45 | 2020 |
| The episodic resurgence of highly pathogenic avian influenza H5 virus R Xie, KM Edwards, M Wille, X Wei, SS Wong, M Zanin, R El-Shesheny, ... Nature 622 (7984), 810-817, 2023 | 39 | 2023 |
| BastionHub: a universal platform for integrating and analyzing substrates secreted by Gram-negative bacteria J Wang, J Li, Y Hou, W Dai, R Xie, TT Marquez-Lago, A Leier, T Zhou, ... Nucleic acids research 49 (D1), D651-D659, 2021 | 39 | 2021 |
| PaCRISPR: a server for predicting and visualizing anti-CRISPR proteins J Wang, W Dai, J Li, R Xie, RA Dunstan, C Stubenrauch, Y Zhang, ... Nucleic acids research 48 (W1), W348-W357, 2020 | 38 | 2020 |
| AcrHub: an integrative hub for investigating, predicting and mapping anti-CRISPR proteins J Wang, W Dai, J Li, Q Li, R Xie, Y Zhang, C Stubenrauch, T Lithgow Nucleic Acids Research 49 (D1), D630-D638, 2021 | 29 | 2021 |
| Genomic epidemiology of SARS-CoV-2 under an elimination strategy in Hong Kong H Gu, R Xie, DC Adam, JLH Tsui, DK Chu, LDJ Chang, SSY Cheuk, ... Nature Communications 13 (1), 736, 2022 | 25 | 2022 |
| Air travel-related outbreak of multiple SARS-CoV-2 variants V Dhanasekaran, KM Edwards, R Xie, H Gu, DC Adam, LDJ Chang, ... Journal of travel medicine 28 (8), taab149, 2021 | 17 | 2021 |
| Genetic and antigenic characterization of an influenza A (H3N2) outbreak in Cambodia and the greater mekong subregion during the COVID-19 pandemic, 2020 JY Siegers, V Dhanasekaran, R Xie, YM Deng, S Patel, V Ieng, J Moselen, ... Journal of virology 95 (24), 10.1128/jvi. 01267-21, 2021 | 17 | 2021 |
| Bastion3: a two-layer approach for identifying type III secreted effectors using ensemble learning J Wang, J Li, B Yang, R Xie, TT Marquez-Lago, A Leier, M Hayashida, ... Bioinformatics 35 (12), 2017-2028, 2018 | 14 | 2018 |
| Resurgence of omicron BA. 2 in SARS-CoV-2 infection-naive Hong Kong R Xie, KM Edwards, DC Adam, KSM Leung, TK Tsang, S Gurung, ... Nature communications 14 (1), 2422, 2023 | 12 | 2023 |
| SARS-CoV-2 under an elimination strategy in Hong Kong H Gu, R Xie, DC Adam, JLH Tsui, DK Chu, LDJ Chang, SSY Cheuk, ... medRxiv, 2021 | 10 | 2021 |
| Human seasonal influenza under COVID-19 and the potential consequences of influenza lineage elimination. Nat Commun 13: 1721 V Dhanasekaran, S Sullivan, KM Edwards, R Xie, A Khvorov, ... | 9 | 2022 |
| Off-season RSV epidemics in Australia after easing of COVID-19 restrictions. Nat Commun. 2022; 13 (1): 2884 JS Eden, C Sikazwe, R Xie, YM Deng, SG Sullivan, A Michie, ... | 9 | |
| Genetic diversity of SARS-CoV-2 among travelers arriving in Hong Kong H Gu, DKW Chu, LDJ Chang, SSY Cheuk, S Gurung, P Krishnan, ... Emerging Infectious Diseases 27 (10), 2666, 2021 | 8 | 2021 |
| Off-season RSV epidemics in Australia after easing of COVID-19 restrictions. Nat Commun. 2022; 13: 2884 JS Eden, C Sikazwe, R Xie, YM Deng, SG Sullivan, A Michie, ... DOI, 0 | 7 | |
