Martin Krallinger

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Alfonso ValenciaICREA Professor. Barcelona Supercomputing Center.Verified email at bsc.es
Florian LeitnerData Catalytics, ION Analytics, IE UniversityVerified email at datacatalytics.com
Lynette HirschmanThe MITRE CorporationVerified email at mitre.org
Antonio Miranda-EscaladaSenior Data Scientist, LHF LabsVerified email at lhf.ai
Marta VillegasBarcelona Supercomputing CenterVerified email at bsc.es
Obdulia RabalCIMA - University of NavarraVerified email at unav.es
Salvador Lima-LópezResearch Engineer, Barcelona Supercomputing CenterVerified email at bsc.es
Ander IntxaurrondoResearcher at the Barcelona Supercomputing CenterVerified email at bsc.es
Eulàlia Farré-MaduellBarcelona Supercomputing CenterVerified email at bsc.es
Luis GascoAvatureVerified email at avature.net
Miguel VazquezBarcelona Supercomputing Center - Spanish National HPCVerified email at bsc.es
Anastasios NentidisNCSR "Demokritos", Greece & Aristotle University of Thessaloniki, GreeceVerified email at iit.demokritos.gr
Aitor Gonzalez-AgirreBarcelona Supercomputing Center (BSC)Verified email at bsc.es
Georgios PaliourasNational Center for Scientific Research "Demokritos", Athens, GreeceVerified email at iit.demokritos.gr
Anastasia KritharaResearcher in National Center for Scientific Research "Demokritos", Athens, GreeceVerified email at iit.demokritos.gr
Kevin Bretonnel CohenDirector, Biomedical Text Mining, U. Colorado School of MedicineVerified email at ucdenver.edu
Cathy WuUniversity of DelawareVerified email at udel.edu
Cecilia ArighiUniversity of DelawareVerified email at udel.edu
C Rodríguez-PenagosSenior Researcher at Barcelona Supercomputing CenterVerified email at bsc.es
Darryl Estrada-ZavalaBarcelona Supercomputing CenterVerified email at bsc.es

Martin Krallinger

*Head of Natural Language Processing for Biomedical Information Analysis (NLP4BIA), Barcelona

Verified email at bsc.es - Homepage

Biomedicine NLP text mining language models AI


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The CHEMDNER corpus of chemicals and drugs and its annotation principles M Krallinger, O Rabal, F Leitner, M Vazquez, D Salgado, Z Lu, R Leaman, ... Journal of cheminformatics 7, 1-17, 2015	365	2015
Overview of the protein-protein interaction annotation extraction task of BioCreative II M Krallinger, F Leitner, C Rodriguez-Penagos, A Valencia Genome biology 9, 1-19, 2008	361	2008
Information retrieval and text mining technologies for chemistry M Krallinger, O Rabal, A Lourenco, J Oyarzabal, A Valencia Chemical reviews 117 (12), 7673-7761, 2017	293	2017
Overview of the BioCreative VI chemical-protein interaction Track M Krallinger, O Rabal, SA Akhondi, M Pérez Pérez, J Santamaría, ... Proceedings of the sixth BioCreative challenge evaluation workshop 1, 141-146, 2017	290	2017
Linking genes to literature: text mining, information extraction, and retrieval applications for biology M Krallinger, A Valencia, L Hirschman Genome biology 9, 1-14, 2008	282	2008
CHEMDNER: The drugs and chemical names extraction challenge M Krallinger, F Leitner, O Rabal, M Vazquez, J Oyarzabal, A Valencia Journal of cheminformatics 7, 1-11, 2015	265	2015
Text-mining and information-retrieval services for molecular biology M Krallinger, A Valencia Genome biology 6, 1-8, 2005	261	2005
Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge M Krallinger, A Morgan, L Smith, F Leitner, L Tanabe, J Wilbur, ... Genome biology 9, 1-9, 2008	229	2008
Text-mining approaches in molecular biology and biomedicine M Krallinger, RAA Erhardt, A Valencia Drug discovery today 10 (6), 439-445, 2005	223	2005
BioC: a minimalist approach to interoperability for biomedical text processing DC Comeau, R Islamaj Doğan, P Ciccarese, KB Cohen, M Krallinger, ... Database 2013, 2013	209	2013
The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text M Krallinger, M Vazquez, F Leitner, D Salgado, A Chatr-Aryamontri, ... BMC bioinformatics 12, 1-31, 2011	196	2011
Text mining for the biocuration workflow L Hirschman, GAP Burns, M Krallinger, C Arighi, KB Cohen, A Valencia, ... Database 2012, 2012	190	2012
Evaluation of BioCreAtIvE assessment of task 2 C Blaschke, EA Leon, M Krallinger, A Valencia BMC bioinformatics 6, 1-13, 2005	185	2005
An overview of BioCreative II. 5 F Leitner, SA Mardis, M Krallinger, G Cesareni, LA Hirschman, A Valencia IEEE/ACM Transactions on Computational Biology and Bioinformatics 7 (3), 385-399, 2010	147	2010
Overview of the BioCreative III workshop CN Arighi, Z Lu, M Krallinger, KB Cohen, WJ Wilbur, A Valencia, ... BMC bioinformatics 12, 1-9, 2011	132	2011
Text mining for biology-the way forward: opinions from leading scientists RB Altman, CM Bergman, J Blake, C Blaschke, A Cohen, F Gannon, ... Genome biology 9, 1-15, 2008	131	2008
Named Entity Recognition, Concept Normalization and Clinical Coding: Overview of the Cantemist Track for Cancer Text Mining in Spanish, Corpus, Guidelines, Methods and Results. A Miranda-Escalada, E Farré, M Krallinger IberLEF@ SEPLN, 303-323, 2020	124	2020
Text mining for metabolic pathways, signaling cascades, and protein networks R Hoffmann, M Krallinger, E Andres, J Tamames, C Blaschke, A Valencia Science's STKE 2005 (283), pe21-pe21, 2005	121	2005
Pharmaconer: Pharmacological substances, compounds and proteins named entity recognition track A Gonzalez-Agirre, M Marimon, A Intxaurrondo, O Rabal, M Villegas, ... Proceedings of The 5th Workshop on BioNLP Open Shared Tasks, 1-10, 2019	118	2019
Analysis of biological processes and diseases using text mining approaches M Krallinger, F Leitner, A Valencia Bioinformatics Methods in Clinical Research, 341-382, 2010	116	2010

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