Guillaume Jospin
Guillaume Jospin
Bioinformatics engineer, University of California at Davis
Verified email at ucdavis.edu
TitleCited byYear
A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data
D Coil, G Jospin, AE Darling
Bioinformatics 31 (4), 587-589, 2014
4982014
PhyloSift: phylogenetic analysis of genomes and metagenomes
AE Darling, G Jospin, E Lowe, FA Matsen IV, HM Bik, JA Eisen
PeerJ 2, e243, 2014
3902014
Systematic identification of gene families for use as “markers” for phylogenetic and phylogeny-driven ecological studies of bacteria and archaea and their major subgroups
D Wu, G Jospin, JA Eisen
PloS one 8 (10), e77033, 2013
1402013
Global marine bacterial diversity peaks at high latitudes in winter
J Ladau, TJ Sharpton, MM Finucane, G Jospin, SW Kembel, J O'dwyer, ...
The ISME journal 7 (9), 1669, 2013
1222013
PhyloSift: phylogenetic analysis of genomes and metagenomes. PeerJ 2: e243
AE Darling, G Jospin, E Lowe, FA Matsen, HM Bik, JA Eisen
742014
The bacterial communities of Drosophila suzukii collected from undamaged cherries
JA Chandler, PM James, G Jospin, JM Lang
PeerJ 2, e474, 2014
432014
Nitrogen fixation in a landrace of maize is supported by a mucilage-associated diazotrophic microbiota
A Van Deynze, P Zamora, PM Delaux, C Heitmann, D Jayaraman, ...
PLoS biology 16 (8), e2006352, 2018
422018
Marine probiotics: increasing coral resistance to bleaching through microbiome manipulation
PM Rosado, DCA Leite, GAS Duarte, RM Chaloub, G Jospin, ...
The ISME journal 13 (4), 921, 2019
262019
Transcriptome analysis in whole blood reveals increased microbial diversity in schizophrenia
LMO Loohuis, S Mangul, APS Ori, G Jospin, D Koslicki, HT Yang, T Wu, ...
Translational psychiatry 8 (1), 96, 2018
25*2018
Swabs to genomes: a comprehensive workflow
MI Dunitz, JM Lang, G Jospin, AE Darling, JA Eisen, DA Coil
PeerJ 3, e960, 2015
242015
Sifting through genomes with iterative-sequence clustering produces a large, phylogenetically diverse protein-family resource
TJ Sharpton, G Jospin, D Wu, MGI Langille, KS Pollard, JA Eisen
BMC bioinformatics 13 (1), 264, 2012
232012
Sifting through genomes with iterative-sequence clustering produces a large, phylogenetically diverse protein-family resource
TJ Sharpton, G Jospin, D Wu, MGI Langille, KS Pollard, JA Eisen
BMC bioinformatics 13 (1), 264, 2012
232012
Whole genome sequencing of extended-spectrum β-lactamase producing Klebsiella pneumoniae isolated from a patient in Lebanon
S Tokajian, JA Eisen, G Jospin, A Farra, DA Coil
Frontiers in cellular and infection microbiology 5, 32, 2015
212015
Recent outbreaks of Shigellosis in California caused by two distinct populations of Shigella sonnei with either increased virulence or fluoroquinolone resistance
VK Kozyreva, G Jospin, AL Greninger, JP Watt, JA Eisen, V Chaturvedi
mSphere 1 (6), e00344-16, 2016
202016
4th, Bik HM, Eisen JA
AE Darling, G Jospin, E Lowe, FA Matsen
PhyloSift: phylogenetic analysis of genomes and metagenomes. PeerJ 2, e243, 2014
132014
Genome analysis of Streptococcus pyogenes associated with pharyngitis and skin infections
J Ibrahim, JA Eisen, G Jospin, DA Coil, G Khazen, S Tokajian
PloS one 11 (12), e0168177, 2016
102016
Draft genome sequences of 26 Porphyromonas strains isolated from the canine oral microbiome
DA Coil, A Alexiev, C Wallis, C O’Flynn, O Deusch, I Davis, A Horsfall, ...
Genome Announc. 3 (2), e00187-15, 2015
92015
Metagenome-assembled genomes provide new insight into the microbial diversity of two thermal pools in Kamchatka, Russia
LGE Wilkins, CL Ettinger, G Jospin, JA Eisen
Scientific reports 9 (1), 3059, 2019
6*2019
Genomic attributes of extended-spectrum β-lactamase-producing Escherichia coli isolated from patients in Lebanon
S Tokajian, T Salloum, JA Eisen, G Jospin, A Farra, JE Mokhbat, DA Coil
Future microbiology 12 (3), 213-226, 2017
62017
Draft genome sequences of Streptococcus pyogenes strains associated with throat and skin infections in Lebanon
S Tokajian, JA Eisen, G Jospin, DA Coil
Genome Announc. 2 (3), e00358-14, 2014
62014
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Articles 1–20