| A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data D Coil, G Jospin, AE Darling Bioinformatics 31 (4), 587-589, 2014 | 498 | 2014 |
| PhyloSift: phylogenetic analysis of genomes and metagenomes AE Darling, G Jospin, E Lowe, FA Matsen IV, HM Bik, JA Eisen PeerJ 2, e243, 2014 | 390 | 2014 |
| Systematic identification of gene families for use as “markers” for phylogenetic and phylogeny-driven ecological studies of bacteria and archaea and their major subgroups D Wu, G Jospin, JA Eisen PloS one 8 (10), e77033, 2013 | 140 | 2013 |
| Global marine bacterial diversity peaks at high latitudes in winter J Ladau, TJ Sharpton, MM Finucane, G Jospin, SW Kembel, J O'dwyer, ... The ISME journal 7 (9), 1669, 2013 | 122 | 2013 |
| PhyloSift: phylogenetic analysis of genomes and metagenomes. PeerJ 2: e243 AE Darling, G Jospin, E Lowe, FA Matsen, HM Bik, JA Eisen | 74 | 2014 |
| The bacterial communities of Drosophila suzukii collected from undamaged cherries JA Chandler, PM James, G Jospin, JM Lang PeerJ 2, e474, 2014 | 43 | 2014 |
| Nitrogen fixation in a landrace of maize is supported by a mucilage-associated diazotrophic microbiota A Van Deynze, P Zamora, PM Delaux, C Heitmann, D Jayaraman, ... PLoS biology 16 (8), e2006352, 2018 | 42 | 2018 |
| Marine probiotics: increasing coral resistance to bleaching through microbiome manipulation PM Rosado, DCA Leite, GAS Duarte, RM Chaloub, G Jospin, ... The ISME journal 13 (4), 921, 2019 | 26 | 2019 |
| Transcriptome analysis in whole blood reveals increased microbial diversity in schizophrenia LMO Loohuis, S Mangul, APS Ori, G Jospin, D Koslicki, HT Yang, T Wu, ... Translational psychiatry 8 (1), 96, 2018 | 25* | 2018 |
| Swabs to genomes: a comprehensive workflow MI Dunitz, JM Lang, G Jospin, AE Darling, JA Eisen, DA Coil PeerJ 3, e960, 2015 | 24 | 2015 |
| Sifting through genomes with iterative-sequence clustering produces a large, phylogenetically diverse protein-family resource TJ Sharpton, G Jospin, D Wu, MGI Langille, KS Pollard, JA Eisen BMC bioinformatics 13 (1), 264, 2012 | 23 | 2012 |
| Sifting through genomes with iterative-sequence clustering produces a large, phylogenetically diverse protein-family resource TJ Sharpton, G Jospin, D Wu, MGI Langille, KS Pollard, JA Eisen BMC bioinformatics 13 (1), 264, 2012 | 23 | 2012 |
| Whole genome sequencing of extended-spectrum β-lactamase producing Klebsiella pneumoniae isolated from a patient in Lebanon S Tokajian, JA Eisen, G Jospin, A Farra, DA Coil Frontiers in cellular and infection microbiology 5, 32, 2015 | 21 | 2015 |
| Recent outbreaks of Shigellosis in California caused by two distinct populations of Shigella sonnei with either increased virulence or fluoroquinolone resistance VK Kozyreva, G Jospin, AL Greninger, JP Watt, JA Eisen, V Chaturvedi mSphere 1 (6), e00344-16, 2016 | 20 | 2016 |
| 4th, Bik HM, Eisen JA AE Darling, G Jospin, E Lowe, FA Matsen PhyloSift: phylogenetic analysis of genomes and metagenomes. PeerJ 2, e243, 2014 | 13 | 2014 |
| Genome analysis of Streptococcus pyogenes associated with pharyngitis and skin infections J Ibrahim, JA Eisen, G Jospin, DA Coil, G Khazen, S Tokajian PloS one 11 (12), e0168177, 2016 | 10 | 2016 |
| Draft genome sequences of 26 Porphyromonas strains isolated from the canine oral microbiome DA Coil, A Alexiev, C Wallis, C O’Flynn, O Deusch, I Davis, A Horsfall, ... Genome Announc. 3 (2), e00187-15, 2015 | 9 | 2015 |
| Metagenome-assembled genomes provide new insight into the microbial diversity of two thermal pools in Kamchatka, Russia LGE Wilkins, CL Ettinger, G Jospin, JA Eisen Scientific reports 9 (1), 3059, 2019 | 6* | 2019 |
| Genomic attributes of extended-spectrum β-lactamase-producing Escherichia coli isolated from patients in Lebanon S Tokajian, T Salloum, JA Eisen, G Jospin, A Farra, JE Mokhbat, DA Coil Future microbiology 12 (3), 213-226, 2017 | 6 | 2017 |
| Draft genome sequences of Streptococcus pyogenes strains associated with throat and skin infections in Lebanon S Tokajian, JA Eisen, G Jospin, DA Coil Genome Announc. 2 (3), e00358-14, 2014 | 6 | 2014 |
