| A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data D Coil, G Jospin, AE Darling Bioinformatics 31 (4), 587-589, 2015 | 628 | 2015 |
| PhyloSift: phylogenetic analysis of genomes and metagenomes AE Darling, G Jospin, E Lowe, FA Matsen IV, HM Bik, JA Eisen PeerJ 2, e243, 2014 | 448 | 2014 |
| Systematic identification of gene families for use as “markers” for phylogenetic and phylogeny-driven ecological studies of bacteria and archaea and their major subgroups D Wu, G Jospin, JA Eisen PloS one 8 (10), e77033, 2013 | 148 | 2013 |
| Global marine bacterial diversity peaks at high latitudes in winter J Ladau, TJ Sharpton, MM Finucane, G Jospin, SW Kembel, J O'dwyer, ... The ISME journal 7 (9), 1669-1677, 2013 | 144 | 2013 |
| PhyloSift: phylogenetic analysis of genomes and metagenomes. PeerJ 2: e243 AE Darling, G Jospin, E Lowe, FA Matsen, HM Bik, JA Eisen | 84 | 2014 |
| Nitrogen fixation in a landrace of maize is supported by a mucilage-associated diazotrophic microbiota A Van Deynze, P Zamora, PM Delaux, C Heitmann, D Jayaraman, ... PLoS biology 16 (8), e2006352, 2018 | 78 | 2018 |
| Marine probiotics: increasing coral resistance to bleaching through microbiome manipulation PM Rosado, DCA Leite, GAS Duarte, RM Chaloub, G Jospin, ... The ISME journal 13 (4), 921-936, 2019 | 66 | 2019 |
| The bacterial communities of Drosophila suzukii collected from undamaged cherries JA Chandler, PM James, G Jospin, JM Lang PeerJ 2, e474, 2014 | 50 | 2014 |
| Transcriptome analysis in whole blood reveals increased microbial diversity in schizophrenia LMO Loohuis, S Mangul, APS Ori, G Jospin, D Koslicki, HT Yang, T Wu, ... Translational psychiatry 8 (1), 1-9, 2018 | 38* | 2018 |
| Swabs to genomes: a comprehensive workflow MI Dunitz, JM Lang, G Jospin, AE Darling, JA Eisen, DA Coil PeerJ 3, e960, 2015 | 31 | 2015 |
| Recent outbreaks of shigellosis in California caused by two distinct populations of Shigella sonnei with either increased virulence or fluoroquinolone resistance VK Kozyreva, G Jospin, AL Greninger, JP Watt, JA Eisen, V Chaturvedi Msphere 1 (6), 2016 | 27 | 2016 |
| Sifting through genomes with iterative-sequence clustering produces a large, phylogenetically diverse protein-family resource TJ Sharpton, G Jospin, D Wu, MGI Langille, KS Pollard, JA Eisen BMC bioinformatics 13 (1), 1-12, 2012 | 25 | 2012 |
| Sifting through genomes with iterative-sequence clustering produces a large, phylogenetically diverse protein-family resource TJ Sharpton, G Jospin, D Wu, MGI Langille, KS Pollard, JA Eisen BMC bioinformatics 13 (1), 1-12, 2012 | 25 | 2012 |
| Metagenome-assembled genomes provide new insight into the microbial diversity of two thermal pools in Kamchatka, Russia LGE Wilkins, CL Ettinger, G Jospin, JA Eisen Scientific reports 9 (1), 1-15, 2019 | 23* | 2019 |
| Whole genome sequencing of extended-spectrum β-lactamase producing Klebsiella pneumoniae isolated from a patient in Lebanon S Tokajian, JA Eisen, G Jospin, A Farra, DA Coil Frontiers in cellular and infection microbiology 5, 32, 2015 | 23 | 2015 |
| 4th, Bik HM, Eisen JA AE Darling, G Jospin, E Lowe, FA Matsen PhyloSift: phylogenetic analysis of genomes and metagenomes. PeerJ 2, e243, 2014 | 19 | 2014 |
| Genome Analysis of Streptococcus pyogenes Associated with Pharyngitis and Skin Infections J Ibrahim, JA Eisen, G Jospin, DA Coil, G Khazen, S Tokajian PLoS One 11 (12), e0168177, 2016 | 14 | 2016 |
| Draft genome sequences of 26 Porphyromonas strains isolated from the canine oral microbiome DA Coil, A Alexiev, C Wallis, C O’Flynn, O Deusch, I Davis, A Horsfall, ... Genome announcements 3 (2), 2015 | 9 | 2015 |
| Draft genome sequences of Streptococcus pyogenes strains associated with throat and skin infections in Lebanon S Tokajian, JA Eisen, G Jospin, DA Coil Genome announcements 2 (3), 2014 | 7 | 2014 |
| Genomic attributes of extended-spectrum β-lactamase-producing Escherichia coli isolated from patients in Lebanon S Tokajian, T Salloum, JA Eisen, G Jospin, A Farra, JE Mokhbat, DA Coil Future Microbiology 12 (3), 213-226, 2017 | 6 | 2017 |
