| A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data D Coil, G Jospin, AE Darling Bioinformatics 31 (4), 587-589, 2015 | 880 | 2015 |
| PhyloSift: phylogenetic analysis of genomes and metagenomes AE Darling, G Jospin, E Lowe, FA Matsen IV, HM Bik, JA Eisen PeerJ 2, e243, 2014 | 569 | 2014 |
| Nitrogen fixation in a landrace of maize is supported by a mucilage-associated diazotrophic microbiota A Van Deynze, P Zamora, PM Delaux, C Heitmann, D Jayaraman, ... PLoS biology 16 (8), e2006352, 2018 | 206 | 2018 |
| Marine probiotics: increasing coral resistance to bleaching through microbiome manipulation PM Rosado, DCA Leite, GAS Duarte, RM Chaloub, G Jospin, ... The ISME journal 13 (4), 921-936, 2019 | 184 | 2019 |
| Global marine bacterial diversity peaks at high latitudes in winter J Ladau, TJ Sharpton, MM Finucane, G Jospin, SW Kembel, J O'dwyer, ... The ISME journal 7 (9), 1669-1677, 2013 | 178 | 2013 |
| Systematic identification of gene families for use as “markers” for phylogenetic and phylogeny-driven ecological studies of bacteria and archaea and their major subgroups D Wu, G Jospin, JA Eisen PloS one 8 (10), e77033, 2013 | 177 | 2013 |
| PhyloSift: phylogenetic analysis of genomes and metagenomes. PeerJ 2: e243 AE Darling, G Jospin, E Lowe, FA Matsen, HM Bik, JA Eisen | 110 | 2014 |
| Transcriptome analysis in whole blood reveals increased microbial diversity in schizophrenia LM Olde Loohuis, S Mangul, APS Ori, G Jospin, D Koslicki, HT Yang, ... Translational psychiatry 8 (1), 1-9, 2018 | 81* | 2018 |
| The bacterial communities of Drosophila suzukii collected from undamaged cherries JA Chandler, PM James, G Jospin, JM Lang PeerJ 2, e474, 2014 | 63 | 2014 |
| Metagenome-assembled genomes provide new insight into the microbial diversity of two thermal pools in Kamchatka, Russia LGE Wilkins, CL Ettinger, G Jospin, JA Eisen Scientific reports 9 (1), 1-15, 2019 | 61 | 2019 |
| Recent outbreaks of shigellosis in California caused by two distinct populations of Shigella sonnei with either increased virulence or fluoroquinolone resistance VK Kozyreva, G Jospin, AL Greninger, JP Watt, JA Eisen, V Chaturvedi Msphere 1 (6), e00344-16, 2016 | 39 | 2016 |
| Swabs to genomes: a comprehensive workflow MI Dunitz, JM Lang, G Jospin, AE Darling, JA Eisen, DA Coil PeerJ 3, e960, 2015 | 33 | 2015 |
| Whole genome sequencing of extended-spectrum β-lactamase producing Klebsiella pneumoniae isolated from a patient in Lebanon S Tokajian, JA Eisen, G Jospin, A Farra, DA Coil Frontiers in cellular and infection microbiology 5, 32, 2015 | 30 | 2015 |
| 4th, Bik HM, Eisen JA AE Darling, G Jospin, E Lowe, FA Matsen PhyloSift: phylogenetic analysis of genomes and metagenomes. PeerJ 2, e243, 2014 | 29 | 2014 |
| Sifting through genomes with iterative-sequence clustering produces a large, phylogenetically diverse protein-family resource TJ Sharpton, G Jospin, D Wu, MGI Langille, KS Pollard, JA Eisen BMC bioinformatics 13 (1), 1-12, 2012 | 29 | 2012 |
| Sifting through genomes with iterative-sequence clustering produces a large, phylogenetically diverse protein-family resource TJ Sharpton, G Jospin, D Wu, MGI Langille, KS Pollard, JA Eisen BMC bioinformatics 13 (1), 1-12, 2012 | 29 | 2012 |
| Genome Analysis of Streptococcus pyogenes Associated with Pharyngitis and Skin Infections J Ibrahim, JA Eisen, G Jospin, DA Coil, G Khazen, S Tokajian PLoS One 11 (12), e0168177, 2016 | 27 | 2016 |
| A phylogenetically novel cyanobacterium most closely related to Gloeobacter CL Grettenberger, DY Sumner, K Wall, CT Brown, JA Eisen, TJ Mackey, ... The ISME journal 14 (8), 2142-2152, 2020 | 18 | 2020 |
| Comparison of Whole-Genome Sequences of Legionella pneumophila in Tap Water and in Clinical Strains, Flint, Michigan, USA, 2016 E Garner, CL Brown, DO Schwake, WJ Rhoads, G Arango-Argoty, ... Emerging infectious diseases 25 (11), 2013, 2019 | 15 | 2019 |
| Microbial community succession and nutrient cycling responses following perturbations of experimental saltwater aquaria HM Bik, A Alexiev, SK Aulakh, L Bharadwaj, J Flanagan, JM Haggerty, ... MSphere 4 (1), e00043-19, 2019 | 14 | 2019 |
