| Multicategory classification using an extreme learning machine for microarray gene expression cancer diagnosis R Zhang, GB Huang, N Sundararajan, P Saratchandran IEEE/ACM transactions on Computational Biology and Bioinformatics 4 (3), 485-495, 2007 | 279 | 2007 |
| Physiological, biochemical and molecular responses of the potato (Solanum tuberosum L.) plant to moderately elevated temperature RD Hancock, WL Morris, LJM Ducreux, JA Morris, M Usman, SR Verrall, ... Plant, cell & environment 37 (2), 439-450, 2014 | 273 | 2014 |
| A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing R Zhang, CPG Calixto, Y Marquez, P Venhuizen, NA Tzioutziou, W Guo, ... Nucleic acids research 45 (9), 5061-5073, 2017 | 237 | 2017 |
| Rapid and dynamic alternative splicing impacts the Arabidopsis cold response transcriptome CPG Calixto, W Guo, AB James, NA Tzioutziou, JC Entizne, PE Panter, ... The Plant Cell 30 (7), 1424-1444, 2018 | 233 | 2018 |
| Deterministic protein inference for shotgun proteomics data provides new insights into Arabidopsis pollen development and function MA Grobei, E Qeli, E Brunner, H Rehrauer, R Zhang, B Roschitzki, ... Genome research 19 (10), 1786-1800, 2009 | 180 | 2009 |
| Phytophthora capsici-tomato interaction features dramatic shifts in gene expression associated with a hemi-biotrophic lifestyle J Jupe, R Stam, AJM Howden, JA Morris, R Zhang, PE Hedley, E Huitema Genome biology 14, 1-18, 2013 | 153 | 2013 |
| Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing R Zhang, D Marshall, GJ Bryan, C Hornyik PLoS One 8 (2), e57233, 2013 | 139 | 2013 |
| Alignment of LC‐MS images, with applications to biomarker discovery and protein identification M Vandenbogaert, S Li‐Thiao‐Té, HM Kaltenbach, R Zhang, T Aittokallio, ... Proteomics 8 (4), 650-672, 2008 | 126 | 2008 |
| Illuminating the dark side of the human transcriptome with long read transcript sequencing RI Kuo, Y Cheng, R Zhang, JWS Brown, J Smith, AL Archibald, DW Burt BMC genomics 21, 1-22, 2020 | 101 | 2020 |
| Barley SIX-ROWED SPIKE3 encodes a putative Jumonji C-type H3K9me2/me3 demethylase that represses lateral spikelet fertility H Bull, MC Casao, M Zwirek, AJ Flavell, WTB Thomas, W Guo, R Zhang, ... Nature Communications 8 (1), 936, 2017 | 92 | 2017 |
| 3D RNA-seq: a powerful and flexible tool for rapid and accurate differential expression and alternative splicing analysis of RNA-seq data for biologists W Guo, NA Tzioutziou, G Stephen, I Milne, CPG Calixto, R Waugh, ... RNA biology 18 (11), 1574-1587, 2021 | 86 | 2021 |
| Cold-dependent expression and alternative splicing of Arabidopsis long non-coding RNAs CPG Calixto, NA Tzioutziou, AB James, C Hornyik, W Guo, R Zhang, ... Frontiers in Plant Science 10, 404796, 2019 | 57 | 2019 |
| Potato miR828 is associated with purple tuber skin and flesh color N Bonar, M Liney, R Zhang, C Austin, J Dessoly, D Davidson, J Stephens, ... Frontiers in plant science 9, 1742, 2018 | 54 | 2018 |
| BaRTv1. 0: an improved barley reference transcript dataset to determine accurate changes in the barley transcriptome using RNA-seq P Rapazote-Flores, M Bayer, L Milne, CD Mayer, J Fuller, W Guo, ... BMC genomics 20, 1-17, 2019 | 51 | 2019 |
| Improved GAP-RBF network for classification problems R Zhang, GB Huang, N Sundararajan, P Saratchandran Neurocomputing 70 (16-18), 3011-3018, 2007 | 45 | 2007 |
| Nonsense-mediated RNA decay factor UPF1 is critical for posttranscriptional and translational gene regulation in Arabidopsis VK Raxwal, CG Simpson, J Gloggnitzer, JC Entinze, W Guo, R Zhang, ... Plant Cell 32 (9), 2725-2741, 2020 | 44 | 2020 |
| AtRTD – a comprehensive reference transcript dataset resource for accurate quantification of transcript‐specific expression in Arabidopsis thaliana R Zhang, CPG Calixto, NA Tzioutziou, AB James, CG Simpson, W Guo, ... New Phytologist 208 (1), 96-101, 2015 | 44 | 2015 |
| Insight on Genes Affecting Tuber Development in Potato upon Potato spindle tuber viroid (PSTVd) Infection K Katsarou, Y Wu, R Zhang, N Bonar, J Morris, PE Hedley, GJ Bryan, ... PLoS One 11 (3), e0150711, 2016 | 40 | 2016 |
| A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis R Zhang, R Kuo, M Coulter, CPG Calixto, JC Entizne, W Guo, Y Marquez, ... Genome biology 23 (1), 149, 2022 | 36 | 2022 |
| High‐quality reference transcript datasets hold the key to transcript‐specific RNA‐sequencing analysis in plants JWS Brown, CPG Calixto, R Zhang New Phytologist 213 (2), 525-530, 2017 | 35 | 2017 |
Cristiane P G CalixtoUniversity of Sao PauloVerified email at usp.br
