Sara Ballouz
Sara Ballouz
Garvan-Weizmann Centre for Cellular Genomics
Verified email at - Homepage
Cited by
Cited by
Guidance for RNA-seq co-expression network construction and analysis: safety in numbers
S Ballouz, W Verleyen, J Gillis
Bioinformatics 31 (13), 2123-2130, 2015
Characterizing the replicability of cell types defined by single cell RNA-sequencing data using MetaNeighbor
M Crow, A Paul, S Ballouz, ZJ Huang, J Gillis
Nature communications 9 (1), 1-12, 2018
Is it time to change the reference genome?
S Ballouz, A Dobin, JA Gillis
Genome biology 20 (1), 1-9, 2019
Predictability of human differential gene expression
M Crow, N Lim, S Ballouz, P Pavlidis, J Gillis
Proceedings of the National Academy of Sciences 116 (13), 6491-6500, 2019
Exploiting single-cell expression to characterize co-expression replicability
M Crow, A Paul, S Ballouz, ZJ Huang, J Gillis
Genome biology 17 (1), 1-19, 2016
EGAD: ultra-fast functional analysis of gene networks
S Ballouz, M Weber, P Pavlidis, J Gillis
Bioinformatics 33 (4), 612-614, 2017
Bias tradeoffs in the creation and analysis of protein–protein interaction networks
J Gillis, S Ballouz, P Pavlidis
Journal of proteomics 100, 44-54, 2014
Conditions for the evolution of gene clusters in bacterial genomes
S Ballouz, AR Francis, R Lan, MM Tanaka
PLoS computational biology 6 (2), e1000672, 2010
Using predictive specificity to determine when gene set analysis is biologically meaningful
S Ballouz, P Pavlidis, J Gillis
Nucleic acids research 45 (4), e20-e20, 2017
Identification of novel therapeutics for complex diseases from genome-wide association data
MP Grover, S Ballouz, KA Mohanasundaram, RA George, CD H Sherman, ...
BMC medical genomics 7 (1), 1-14, 2014
Web tools for the prioritization of candidate disease genes
M Oti, S Ballouz, MA Wouters
In silico tools for gene discovery, 189-206, 2011
Novel therapeutics for coronary artery disease from genome-wide association study data
MP Grover, S Ballouz, KA Mohanasundaram, RA George, A Goscinski, ...
BMC medical genomics 8 (2), 1-11, 2015
Measuring the wisdom of the crowds in network-based gene function inference
W Verleyen, S Ballouz, J Gillis
Bioinformatics 31 (5), 745-752, 2015
CoCoCoNet: conserved and comparative co-expression across a diverse set of species
J Lee, M Shah, S Ballouz, M Crow, J Gillis
Nucleic acids research 48 (W1), W566-W571, 2020
The fractured landscape of RNA-seq alignment: the default in our STARs
S Ballouz, A Dobin, TR Gingeras, J Gillis
Nucleic acids research 46 (10), 5125-5138, 2018
Comparison of automated candidate gene prediction systems using genes implicated in type 2 diabetes by genome-wide association studies
ET Teber, JY Liu, S Ballouz, D Fatkin, MA Wouters
BMC bioinformatics 10 (1), S69, 2009
Ligand similarity complements sequence, physical interaction, and co-expression for gene function prediction
MJ O’Meara, S Ballouz, BK Shoichet, J Gillis
PloS one 11 (7), e0160098, 2016
Strength of functional signature correlates with effect size in autism
S Ballouz, J Gillis
Genome Medicine 9 (64), 2017
Candidate disease gene prediction using Gentrepid: application to a genome‐wide association study on coronary artery disease
S Ballouz, JY Liu, M Oti, B Gaeta, D Fatkin, M Bahlo, MA Wouters
Molecular Genetics & Genomic Medicine 2 (1), 44-57, 2014
Co-expression of calcium and hERG potassium channels reduces the incidence of proarrhythmic events
S Ballouz, MM Mangala, MD Perry, S Heitmann, JA Gillis, AP Hill, ...
Cardiovascular Research 117 (10), 2216-2227, 2021
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