David Kainer
David Kainer
Postdoctoral Research Associate, Oak Ridge National Laboratory
Verified email at ornl.gov
TitleCited byYear
Selecting optimal partitioning schemes for phylogenomic datasets
R Lanfear, B Calcott, D Kainer, C Mayer, A Stamatakis
BMC evolutionary biology 14 (1), 82, 2014
3692014
The effects of partitioning on phylogenetic inference
D Kainer, R Lanfear
Molecular biology and evolution 32 (6), 1611-1627, 2015
592015
Plant-Derived Terpenes: A Feedstock for Specialty Biofuels
R Mewalal, DK Rai, D Kainer, F Chen, C Külheim, GF Peter, GA Tuskan
Trends in Biotechnology 35 (3), 227-240, 2017
502017
MinIONQC: fast and simple quality control for MinION sequencing data
R Lanfear, M Schalamun, D Kainer, W Wang, B Schwessinger
Bioinformatics 35 (3), 523-525, 2019
192019
Attacking the opioid epidemic: determining the epistatic and pleiotropic genetic architectures for chronic pain and opioid addiction
W Joubert, D Weighill, D Kainer, S Climer, A Justice, K Fagnan, ...
SC18: International Conference for High Performance Computing, Networking …, 2018
122018
Genomic approaches to selection in outcrossing perennials: focus on essential oil crops
D Kainer, R Lanfear, WJ Foley, C Külheim
Theoretical and Applied Genetics 128 (12), 2351-2365, 2015
122015
Harnessing the MinION: An example of how to establish long‐read sequencing in a laboratory using challenging plant tissue from Eucalyptus pauciflora
M Schalamun, R Nagar, D Kainer, E Beavan, D Eccles, JP Rathjen, ...
Molecular ecology resources 19 (1), 77-89, 2019
112019
Accelerating Climate Resilient Plant Breeding by Applying Next-Generation Artificial Intelligence
AL Harfouche, DA Jacobson, D Kainer, JC Romero, AH Harfouche, ...
Trends in Biotechnology, 2019
92019
Assembly of chloroplast genomes with long-and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case
W Wang, M Schalamun, A Morales-Suarez, D Kainer, B Schwessinger, ...
BMC genomics 19 (1), 977, 2018
92018
Assessment of a non-destructive method to predict oil yield in Eucalyptus polybractea (blue mallee)
D Kainer, D Bush, WJ Foley, C Külheim
Industrial Crops and Products 102, 32-44, 2017
82017
Multi‐trait genome‐wide association analysis of Populus trichocarpa identifies key polymorphisms controlling morphological and physiological traits
HB Chhetri, DM Sanz, D Kainer, AK Biswal, LM Evans, JG Chen, ...
New Phytologist, 2019
72019
Accuracy of Genomic Prediction for Foliar Terpene Traits in Eucalyptus polybractea
D Kainer, EA Stone, A Padovan, WJ Foley, C Külheim
G3: Genes, Genomes, Genetics 8 (8), 2573-2583, 2018
72018
Transcriptome analysis of terpene chemotypes of Melaleuca alternifolia across different tissues
C Bustos‐Segura, A Padovan, D Kainer, WJ Foley, C Külheim
Plant, cell & environment 40 (10), 2406-2425, 2017
52017
High Throughput Screening Technologies in Biomass Characterization
SR Decker, AE Harman-Ware, RM Happs, EJ Wolfrum, GA Tuskan, ...
Frontiers in Energy Research 6, 120, 2018
32018
High marker density GWAS provides novel insights into the genomic architecture of terpene oil yield in Eucalyptus
D Kainer, A Padovan, J Degenhardt, S Krause, P Mondal, WJ Foley, ...
New Phytologist, 2019
12019
Finding New Cell Wall Regulatory Genes in Populus trichocarpa Using Multiple Lines of Evidence
A Furches, D Kainer, D Weighill, A Large, P Jones, AM Walker, J Romero, ...
Frontiers in plant science 10, 1249, 2019
12019
The draft nuclear genome assembly of Eucalyptus pauciflora: a pipeline for comparing de novo assemblies
W Wang, A Das, D Kainer, M Schalamun, A Morales-Suarez, ...
GigaScience 9 (1), giz160, 2020
2020
A High-Performance Computing Implementation of Iterative Random Forest for the Creation of Predictive Expression Networks
A Cliff, J Romero, D Kainer, A Walker, A Furches, D Jacobson
Genes 10 (12), 996, 2019
2019
A phylogenomic approach reveals a low somatic mutation rate in a long-lived plant
AJ Orr, A Padovan, D Kainer, C Külheim, L Bromham, C Bustos-Segura, ...
bioRxiv, 727982, 2019
2019
The draft nuclear genome assembly of Eucalyptus pauciflora: new approaches to comparing de novo assemblies
A Das, D Kainer, M Schalamun, AM Suarez, B Schwessinger, R Lanfear
bioRxiv, 678730, 2019
2019
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Articles 1–20