Rob Edwards - Google Scholar Citations

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Forest RohwerSan Diego State UniversityVerified email at mail.sdsu.edu
Liz DinsdaleProfessor of Biology, San Diego State UniversityVerified email at sdsu.edu
Robert SchmiederSan Diego State UniversityVerified email at sciences.sdsu.edu
Rick StevensProfessor of Computer Science, University of ChicagoVerified email at ci.uchicago.edu
Robert OlsonArgonne National LaboratoryVerified email at mcs.anl.gov
Bas E. DutilhTheoretical Biology and Bioinformatics, Utrecht UniversityVerified email at uu.nl
linda wegley kellySan Diego State UniversityVerified email at sdsu.edu
Mya BreitbartUniversity of South FloridaVerified email at marine.usf.edu
Genivaldo Gueiros Z. SilvaSan Diego State UniversityVerified email at rohan.sdsu.edu
Florent E AnglyGenomic data analyst, The University of QueenslandVerified email at uq.edu.au
Veronika VonsteinFellowship for Interpretation of GenomesVerified email at theFIG.info
Fabiano ThompsonFederal University of Rio de Janeiro (UFRJ)Verified email at biologia.ufrj.br
Gary J. OlsenProfessor of Microbiology, University of Illinois at Urbana-ChampaignVerified email at life.uiuc.edu
Peter SalamonProfessor of Mathematics, San Diego State UniversityVerified email at sdsu.edu
Yan Wei LimSan Diego State University, San Diego, CAVerified email at rohan.sdsu.edu
Katelyn McNairResearch Associate, San Diego State UniversityVerified email at mail.sdsu.edu
Gordon D PuschFellowship for Interpretation of GenomesVerified email at xnet.com
Ramy K. AzizProfessor, Department of Microbiology and Immunology, Faculty of Pharmacy, Cairo University, EgyptVerified email at pharma.cu.edu.eg
Stanley MaloySan Diego State UniversityVerified email at sdsu.edu
Rebecca Vega ThurberAssociate Professor of Microbiology Oregon State UniversityVerified email at oregonstate.edu

Rob Edwards

Professor of Biology, San Diego State University

Verified email at sdsu.edu - Homepage

Metagenomics Microbial Genomics Bioinformatics Data Analysis


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The RAST Server: rapid annotations using subsystems technology R Aziz, D Bartels, A Best, M DeJongh, T Disz, R Edwards, K Formsma, ... BMC genomics 9 (1), 75, 2008	7304	2008
The metagenomics RAST server–a public resource for the automatic phylogenetic and functional analysis of metagenomes F Meyer, D Paarmann, M D'Souza, R Olson, EM Glass, M Kubal, ... BMC bioinformatics 9 (1), 386, 2008	2905	2008
Quality control and preprocessing of metagenomic datasets R Schmieder, R Edwards Bioinformatics 27 (6), 863, 2011	2630	2011
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST) R Overbeek, R Olson, GD Pusch, GJ Olsen, JJ Davis, T Disz, RA Edwards, ... Nucleic acids research 42 (D1), D206-D214, 2014	2249	2014
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes R Overbeek, T Begley, RM Butler, JV Choudhuri, HY Chuang, M Cohoon, ... Nucleic acids research 33 (17), 5691-5702, 2005	1735	2005
Community genomics among stratified microbial assemblages in the ocean's interior EF DeLong, CM Preston, T Mincer, V Rich, SJ Hallam, NU Frigaard, ... Science 311 (5760), 496-503, 2006	1240	2006
The minimum information about a genome sequence (MIGS) specification D Field, G Garrity, T Gray, N Morrison, J Selengut, P Sterk, T Tatusova, ... Nature biotechnology 26 (5), 541-547, 2008	1114	2008
The marine viromes of four oceanic regions FE Angly, B Felts, M Breitbart, P Salamon, RA Edwards, C Carlson, ... PLoS biology 4 (11), e368, 2006	951	2006
Functional metagenomic profiling of nine biomes EA Dinsdale, RA Edwards, D Hall, F Angly, M Breitbart, JM Brulc, ... Nature 452 (7187), 629-632, 2008	913	2008
Viral metagenomics RA Edwards, F Rohwer Nature Reviews Microbiology 3 (6), 504-510, 2005	816	2005
Nitrogen control in bacteria. MJ Merrick, RA Edwards Microbiol. Mol. Biol. Rev. 59 (4), 604-622, 1995	750	1995
RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes T Brettin, JJ Davis, T Disz, RA Edwards, S Gerdes, GJ Olsen, R Olson, ... Scientific reports 5, 8365, 2015	639	2015
Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases JM Brulc, DA Antonopoulos, MEB Miller, MK Wilson, AC Yannarell, ... Proceedings of the National Academy of Sciences 106 (6), 1948-1953, 2009	623	2009
The Phage Proteomic Tree: a genome-based taxonomy for phage F Rohwer, R Edwards Journal of bacteriology 184 (16), 4529-4535, 2002	577	2002
Using pyrosequencing to shed light on deep mine microbial ecology R Edwards, B Rodriguez-Brito, L Wegley, M Haynes, M Breitbart, ... BMC genomics 7 (1), 57, 2006	549	2006
Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soil N Fierer, M Breitbart, J Nulton, P Salamon, C Lozupone, R Jones, ... Applied and Environmental Microbiology 73 (21), 7059-7066, 2007	498	2007
Improved allelic exchange vectors and their use to analyze 987P fimbria gene expression RA Edwards, LH Keller, DM Schifferli Gene 207 (2), 149-157, 1998	495	1998
Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets R Schmieder, R Edwards PLoS One 6 (3), e17288, 2011	481	2011
Metagenomic analysis of stressed coral holobionts RV Thurber, D Willner‐Hall, B Rodriguez‐Mueller, C Desnues, ... Environmental microbiology 11 (8), 2148-2163, 2009	458	2009
Metagenomic analysis of the microbial community associated with the coral Porites astreoides L Wegley, R Edwards, B Rodriguez‐Brito, H Liu, F Rohwer Environmental microbiology 9 (11), 2707-2719, 2007	444	2007

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